Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3972 ATGTCGACTTCGGGCGAGGATCAACCATCTCAATTCAAATTCGAGCTATTATATTCCCCTTCTCACTTTCCTCATCCCCATTCTCGTTCTCTTTTTCCTAATTTCCCCTTGAGTCAAGGATATGAAATCAAGTCTCACACAAGTAATATCGAAGTAGCTCCTGACATGAGCAAAGCAGTTAATCTTCCTCCTCCACTTCAAACCGAGCCTAGCATAAGAGGAAAGCAAAATGGTAAATCAAAAGTTTCAAGAAATGCAAAATCTGGAACTCACAGACCAAGTGCCGATTCCTCTAATTTGACTGCAGTTAGCAACTGCCGTTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTCAGCTTGATCCAGGATGCTAAGGATGGCACCCTGGATCTAAATAAAACCGCTGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATAACAAATGTTCTTGAAGGAGTAGGATTGATAGAGAAAACATCAAAGAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCACGAGAACTGGAAAACCAAGTTAATTGTCTAAAGGCTGAAGTTGAAAGTCTATATGCTGAGGAATGCGAACTTGATGATCGTATAAGgAAAAAGCAGGAGCTTCTAAGAAACCTGGAGGAAAGAGAAAGCTCTCAAAAGTATGAACTTTGGACAACTCGGCTTATATTTAAGCTGCAATTTAATCAAGAAATTATCGCAATCAAGGCTCCAAAAGCTAGTTTCATTGAGGTCCCTGATCCTGATGAGGAATTAGGTTTCCGGCAAAGGCAGTACAAAATGATTGTTAGAAGTGCCACTGGACCAATATATTTGTACCTCTTGAGCAAGGACGAATCATGGAATAGTGATCACTACAGTAAGAGGGGTGTGGGATTCTTAGAAAGgcaagatgataaaaaaaattcttctgaGAGTTTCAGTTTGCAAGGGGGGTCACGAGCATTTGGAATTCAAGAAATTACTCCCATGGGTTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCTAACAGAATTGTGGGCAAATGAGCGGTTGGATCAGATACATGAGCTTCAAGACGATTAA 1113 0.398 MSTSGEDQPSQFKFELLYSPSHFPHPHSRSLFPNFPLSQGYEIKSHTSNIEVAPDMSKAVNLPPPLQTEPSIRGKQNGKSKVSRNAKSGTHRPSADSSNLTAVSNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELENQVNCLKAEVESLYAEECELDDRIRKKQELLRNLEERESSQKYELWTTRLIFKLQFNQEIIAIKAPKASFIEVPDPDEELGFRQRQYKMIVRSATGPIYLYLLSKDESWNSDHYSKRGVGFLERQDDKKNSSESFSLQGGSRAFGIQEITPMGFEMEDDYWFQSDPGVSLTELWANERLDQIHELQDD 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3972 370 Pfam E2F/DP family winged-helix DNA-binding domain 109 172 IPR003316 GO:0005667|GO:0006355
Ssu1g3972 370 MobiDBLite consensus disorder prediction 58 100 - -
Ssu1g3972 370 Gene3D - 102 174 IPR036388 -
Ssu1g3972 370 SUPERFAMILY E2F-DP heterodimerization region 184 288 IPR037241 -
Ssu1g3972 370 Pfam E2F transcription factor CC-MB domain 188 285 IPR032198 GO:0046983
Ssu1g3972 370 PANTHER TRANSCRIPTION FACTOR E2F 39 359 IPR015633 GO:0000978|GO:0006357
Ssu1g3972 370 SMART E2F_TDP_2 107 172 IPR003316 GO:0005667|GO:0006355
Ssu1g3972 370 Gene3D - 179 288 - -
Ssu1g3972 370 SUPERFAMILY "Winged helix" DNA-binding domain 107 170 IPR036390 -
Ssu1g3972 370 CDD E2F_DD 183 288 IPR032198 GO:0046983
Ssu1g3972 370 MobiDBLite consensus disorder prediction 70 100 - -
Ssu1g3972 370 PANTHER TRANSCRIPTION FACTOR E2FC 39 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3972 Ssu-Chr1 98276853 98280694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3972 49 358 E2F-DP Transcription Factor Family AT1G47870 47.771 5.02e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Ssu1g3972 E2F_CC-MB 2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3972 K06620 - gmx:100811650 477.633