Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3966 ATGGCCTACTATTCAAGAAGCTGGCTCCGCTTGTTAATGACAAAGATTTCGCTGGGAAAAAATCTGTTGGAGATTCTCAAGCACACCCTTTCCCTCGCACTCTTCCATTTTTATCCATTGGCTGGCCGCCTTGTCACCCAAAAAACCAAAGACCCTTCCTCTTACACTATTTTCGTTGATTGCAACAACAATTGTGGAGCTAGATTCATTCATGCAACGTTGGATATGACCGTGTCCGACATCCTTTCTCCCGTTGACGTTCCACCCATTGTTCAATCATTCTTTGATCACCACAAAGCAGCGAACCATGACGGTCACACCATGCCACTGTTGTCCGTTAAAGTCACCGAACTAGTGGATGGTCTTTTCATAGGTGTTTCCATGAACCACGCCATAGGTGATGGggcttctttttttaatttcattaatacaTGGTTTGAGATCCTTCATGCACAAGCTCAAGCGAAAGGGCCTTTACGTGATGCTCCCATTTCACGCCATCCAATTCATAATCGGTGGTTTCCGGATGGTTGCAGTCCATTAATCAATCTCCCCTTCAAACATGAGGACGAGTTTATCAAGAGATTTGAAGCACCTAAGCTGAGAGAGAGATTCTTCCACTTCTCAGCGGAGTCTATTGCAAAACTGAAAGCAAGGGCCAACTCCGAGTCCAAAACCACCGAAATCACTTCGTTCCAATCTTTGGCAGCACATGTGTGGAGATGCATAACACGTGCACGCCACCTGCCACGTGATCAGAGAACGAGTTGCAAACTGGCCATAGATAATCGATCGAGAATGGAACCGCCTTTGCCCAAGGAATACTTTGGAAACGCAATTGGTGTGGTGAGTGCAGGGAGCGCGGTAGGGGAGTTGGCTGAACATGATCTGGGATGGGCAGCATGGAAGGTGCACCTTGCCGTTGCAAACCATGACGACAAAGTGGCGCGACACATGCTCAGTGAGTGGTTACAAAGTCCAGTGGTCTACCAACTTGGTTCTCACTTTGATACCTGTAGCGTGACCATGACAAGTTCGCCCAGGTTCAACGCGTATGGGAAACCATTATGGATGTGGAAAGGGGTGGCAGTTCTGAGTGGGTATAACAATAAGTTTGATGGGAACGTAAGATCATACCCAGGACATGAAGGAGGGGGAAGCATAGATTTGGAAATGTCCCTTTCGCCTGATGCAATGACCGCGCTCGAATCAGATGAGGACTTTATGGAAGCAGTTTCTGTTGCCAGTCCCCTGCACTAG 1260 0.4698 MAYYSRSWLRLLMTKISLGKNLLEILKHTLSLALFHFYPLAGRLVTQKTKDPSSYTIFVDCNNNCGARFIHATLDMTVSDILSPVDVPPIVQSFFDHHKAANHDGHTMPLLSVKVTELVDGLFIGVSMNHAIGDGASFFNFINTWFEILHAQAQAKGPLRDAPISRHPIHNRWFPDGCSPLINLPFKHEDEFIKRFEAPKLRERFFHFSAESIAKLKARANSESKTTEITSFQSLAAHVWRCITRARHLPRDQRTSCKLAIDNRSRMEPPLPKEYFGNAIGVVSAGSAVGELAEHDLGWAAWKVHLAVANHDDKVARHMLSEWLQSPVVYQLGSHFDTCSVTMTSSPRFNAYGKPLWMWKGVAVLSGYNNKFDGNVRSYPGHEGGGSIDLEMSLSPDAMTALESDEDFMEAVSVASPLH 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3966 419 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 17 412 - -
Ssu1g3966 419 Pfam Transferase family 21 408 - -
Ssu1g3966 419 Gene3D - 188 404 IPR023213 -
Ssu1g3966 419 Gene3D - 13 174 IPR023213 -
Ssu1g3966 419 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 17 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3966 Ssu-Chr1 98157373 98158632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3966 24 403 Monolignol Biosynthesis Gene Families AT5G48930 27.941 2.23e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3966 - - gmx:100788297 615.92