Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3965 ATGGCTTTGAGAAAATCAGCTAAACTTCCTCAAACAGCACTTCTTAAACAAATCCTCAAGAGATGTTCGAGTTTAGGGAAGAAACAAGGGTACGATGATCGTTTGGACGTGCCTAAGGGTCACTTTGTTGTATATGTTGGAGAAAACAGAAGCAGATATATTGTTCCAATTTCCTTCCTAAGTCGCCCGGAGTTCCAAACGCTTCTCCATCAAGCAGAAGAAGAGTTTGGCTTTGATCATGAAAAGGGTCTCACAATTCCATGTGAAGAGGACGTTTTTGAGTCTCTCACGTCCATGCTCAGATGA 306 0.4216 MALRKSAKLPQTALLKQILKRCSSLGKKQGYDDRLDVPKGHFVVYVGENRSRYIVPISFLSRPEFQTLLHQAEEEFGFDHEKGLTIPCEEDVFESLTSMLR 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3965 101 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 101 IPR003676 GO:0009733
Ssu1g3965 101 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 101 - -
Ssu1g3965 101 Pfam Auxin responsive protein 26 100 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3965 Ssu-Chr1 98134867 98135172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3965 19 96 Calmodulin-binding Proteins AT3G43120 48.750 2.02e-19 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3965 K14488 - gmx:100778552 183.341