Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3960 ATGACAACCTTGCAAATTCCCAAATATCCCAATCTTCCATCTCAGTTGTTGTGCCAAGTCGAAAATGTCACACTTCATGATTACACAATTCAACCACCAACCCAAGAACTTGTTGTCCGAGATTTGCATGATAATACCTGGACTTTTCCATATATATACTACGTTGGTGTTAAACGTGGTGCAAGTCAACAAACATCATTACCATCATCATTCCTTTCTGCTGATAGTGTGTACATTGGTGTGCTTGTTGCTGCAACTCATGCTGCTACTAATCAAACCCCATTCATTATTTTCTACAATCCAAGCAAACAGGTTGAGTGGGATGAGCCAGGATGTAGCAATAAGCAGAATAGAGTTAGTTCATGGGGCACTGAGAATCCAAAAAGTCTTTTCATCTTTCCCTCGTTGACTTTAAGTCTTAAAAGGCCATTGGAACATGGATTATTTGaaCTTGAGGTGGTAAGTGATTGTACACTTGAATTCCGTTCCATGGAGGGCTGCAATGTTGAAAAAATGGCCATAAATCCTCTTAGCCCCCATAGCCTTGCAAACCaattgatattccttaatcaaaaCCAGAGTCCATTAGTGGTTAATATTCTACAATCTGATTCTGTTATTGTGATTGACCTAATTCCTCAACTAGACATTAATGGATGGATGGTGTACTCTTCATGCTAA 681 0.3847 MTTLQIPKYPNLPSQLLCQVENVTLHDYTIQPPTQELVVRDLHDNTWTFPYIYYVGVKRGASQQTSLPSSFLSADSVYIGVLVAATHAATNQTPFIIFYNPSKQVEWDEPGCSNKQNRVSSWGTENPKSLFIFPSLTLSLKRPLEHGLFELEVVSDCTLEFRSMEGCNVEKMAINPLSPHSLANQLIFLNQNQSPLVVNILQSDSVIVIDLIPQLDINGWMVYSSC 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3960 226 PANTHER AUXIN RESPONSE FACTOR 104 189 - -
Ssu1g3960 226 PANTHER AUXIN RESPONSE FACTOR 54 101 - -
Ssu1g3960 226 PANTHER AUXIN RESPONSE FACTOR 27 53 - -
Ssu1g3960 226 PANTHER AUXIN RESPONSE FACTOR 2 26 - -
Ssu1g3960 226 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 104 189 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu1g3960 226 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 53 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu1g3960 226 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 54 101 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu1g3960 226 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 26 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu1g3960 226 SUPERFAMILY DNA-binding pseudobarrel domain 25 94 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3960 Ssu-Chr1 98008385 98011266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3960 2 94 B3 DNA Binding Superfamily AT1G19850 35.789 1.67e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3960 K14486 - thj:104811390 104.76