Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3957 ATGGATGGTCAaactgctttgataccaatAACGCCAATTGAAGATGAAGATGCAGCAGGAGAAACATTATCGGATTCCTTGGAACCATTTGATGTTTCACAATCTGTTGAATTACCTCCTGGTATATTGAAGGATTCAAACTCTGCTACAAATATGCAGTTAACTCGTGGTCTTGCATCTGATGTAGCTGCTGCATCTGTTGCTTTAACTAACATTGTGAAGAGCAATGAACATGGAAAATTGATTGACCATGAATTACTTAATAACATTCTCAACAATCCTGAAGTGATTGAGAAGTTGGTTAGAGATTATGGAGCTACTAATAATTCACAATATGTACATAATGCGGGATCATCCTCAGCCACTTTTTCAAATCCTCCTATTCCTATTAATCAAGGAGAAACCACTACACCTTCATCAGTTGTTCTTTCAGCCACTTCTTCCTTTACTTCCCCAACTGGTGGTCAGGTGGCACCTGTTTCTACCCAATGGCCTCCTAGGCCTGCAGTGAGTGCAGCTATTGTTTCTTCTCCAGTTGAGGTCCCTGCTGCAAAAGATGTAAACTACTATAAGAGCTTAATTCAACAACATGGAGGAGATAAACAAGAAACACTTCCATACTCCAGTAAACGTCAGATTCATCAACCAGTAACAAACTATGAGTCAACATACAATCATAGATCTAAAGGGTCAAAACCAAAGATAATGAAGCCTTGTATCTTTTTCAACAGTTCTAGAGGATGTCGGAATGGAGCTAACTGTGCCTACCAGCATGACGCATCATTTCAGCCACGGGGTAATACTGTGTCAGGGATACAAAGTTCAAAGAGGATGAAAATGGATAATGAAATTAGCAGTTAA 861 0.3879 MDGQTALIPITPIEDEDAAGETLSDSLEPFDVSQSVELPPGILKDSNSATNMQLTRGLASDVAAASVALTNIVKSNEHGKLIDHELLNNILNNPEVIEKLVRDYGATNNSQYVHNAGSSSATFSNPPIPINQGETTTPSSVVLSATSSFTSPTGGQVAPVSTQWPPRPAVSAAIVSSPVEVPAAKDVNYYKSLIQQHGGDKQETLPYSSKRQIHQPVTNYESTYNHRSKGSKPKIMKPCIFFNSSRGCRNGANCAYQHDASFQPRGNTVSGIQSSKRMKMDNEISS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3957 286 MobiDBLite consensus disorder prediction 265 286 - -
Ssu1g3957 286 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 281 - -
Ssu1g3957 286 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6 2 281 - -
Ssu1g3957 286 ProSiteProfiles Zinc finger C3H1-type profile. 233 261 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3957 Ssu-Chr1 97969023 97969883 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu1g3957 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3957 - - gmx:100783321 462.611