Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3955 aTGGGGAAATCTACCTCCTGCTTCAAACTAATCACATGCGGTGGTGGTGATGCGGCGGAGAAGGATGATTACCACCAAGTTTCTGAGATCAAGGAATCTAATGATAAACGTGGTTGGAGTTTCCGCAAAAAATCTGCAAGGCAGCGTGTGCTTAGCAATACTGTGATAGCAGAGGCCCCATCTTCTGCAAATAAGGAAAGTTCAGAATGTACTAATTTTAATGTTCAACCACTTCCTGAACCTGATGTTGTTGAGAAGATTTACACAACAAATAGCTCTGATGAGAAGCCCCAGTTATCCTCCTTTGAAAGCTCACAGGTAGCAGAAACAAATGTCATTGAAACTGAGAGGAAGGTGGATGTGAATCCACCAGAGTCTACTGTCATCATCATCCAGGCTGCTATTAGAGGGTTATTGGCTCAGAGAGAACTACTACAGCTTAAGAAAGTAGTGAAGTTGCAAGCTGCTGTTCGTGGGCACTTGGTCCGGAGGCATGCTGTAGGAACCCTGCGTTGTGTTCAAGCCATCATCAAAATGCAGGTCCTTGTGCGAACTCGTCGTGCTCGGCAGTCACGTCTGGAAAACCATTTAAATCACAAGGATGGTGAAAGGGATTCCTCAGAAGCTTTgGGAAATGAAAATCACATGACCAAATCAAATGTGAATTACACTTCCATTGAGAAGCTGCTTAGCAATAGGTTTGCTTGTCAGcTATTGGAATCAACACCAAGGAACAAACCTATCCATGTCAAGTGTGATCCTTCTAAAGCCGATTCTGCTTGGAAATGGTTGGAAAGGTGGATGTCAGTATCATCAAAAGAAGTATCATCAAAAGATATTGCAGAGTGCAAAGAAACTACTTCTCTGACAGAGCAATCAAGCGAAAGCAAAGATACTGCTTCTGTGTTTCAATTTGAAACAGGTATTCCGTCTGAACCTTTTCTCCAATCAGATGACTCAAAACCCACTGTTGGAGATTCCCATCTGCCATCTGAGCATGAAGAAAAGGTGATTACTTATGATGTTAATAACTTTGAGTTTCAAGCAAGCTGCTTCATGTCATCTATTGTAAAAGATGACTTGGAACAGATTCCTCCTGAAGAAAAAATTGCATATGATGCTAAAGTTGCCCCAGCCGATGCTGATTCCTTCCAGAATGAAAACTCAGCATCAGATGCAAGTACCCCACCAGAGCTTATTTCTCTTCATAAGGGGCCTGAAATTTCCCCATCATCAGAGCATAATTCTCTTCATGAGGGGCCTGAAATTGCCCCACCATCAGAGCATGATTCTCTTCATAAGGGGCCTGAAATTGCCCCACCACCAGAGCTTAATTCTTTTCATCAGAAGCCTGAAATTGATAGTGAGCAGAGCAAACGATCCATGAAAAGATTTGCCTCTGACCAACTAGAGGCTGAAGGAAAGAAACCTGTAAATGGATCAAGAAAGGTCAGTAGTCCTGCATTTATTGCTGCACAGTCAAAATTTGAAGAGCTAAGTTCAATAGCAAATTCAGGTAGGACAAGCAGTTTGTCCTACCAAGATTCAGCAGTTGAATCACAAGGAGACACTTCTTCTGTCGGCAATGATACTGCATATAGATCAAAAGAGTTTGCATTTGAAAATCCTGCTCCTTATCTTTCTAGGTTTGCTGGTTCTGAATGTGGCACTGAACTGTCTATTTCTTCCACTCTTGATTCACCTGACATATCAGAGCCTGGTGCTATGGAAAATGAGCGAGATGCCAAAGATTTAGTGGAAGGGATTGGTAATCTTGAGAACACTATAAACCGTGATGATGAGGCTAATGTTTCATGTGCCATCCCAGCTTCTAACCTAGCTCCTTCTGTTTTGGATCAGTCGGAGATTGTTGATGACATTAGCAGCAATTTGGATCACTCGATAGTAGCTATGGACTCTGAAGAGCCTGCTATTAAGACTGAGAAAAATGCATCTGACCTGCAAAGAGAGCATGCAGAGGCTGTTCTGCAAGATTTAAGATCATCTCCTGAAGCTTCACCTAGAAGCCATTTAACTGTCCCTGAATCACAAGGAACACCTTCAAGTCAAGTGTCTGTGAAACCTAAAGAgagcaaaatcaacaagaatAGATCTGGCAATAAACGTCGGAGCCTATCATTAAGTAACAAATCACCTACAAATCCAAATCACGATTCAGGCTCAAGAGGCAGTAGAGAGCAACTGCCTAAAGATCAGCAGAATGGAAAGAGGCGCAATTCCTTTGGCTCAGTAAAGCCTGATCACATTGATCAAGAACCTAGAGATAATAGTACTGACAATAATTCTCTTCCGCATTTCATGCAAGCTACAGAATCTGCTAGGGCTAAGATTAATGCAAATAACTCTCCAAGATCAAGTCCAGATGTGCATGAACGAGACATCGAAGTTAAGAAGAGACATTCCTTACCTGGTGCCGCTGGTAGGCAAGTTTCTCCACGCATCCAACAAACATCTAAGGCACAGCAGAGTGCAAAAGGAAACAATGTACATCCTCCTCAAGAGAGAAAGTGGCTGAGGTAA 2541 0.4219 MGKSTSCFKLITCGGGDAAEKDDYHQVSEIKESNDKRGWSFRKKSARQRVLSNTVIAEAPSSANKESSECTNFNVQPLPEPDVVEKIYTTNSSDEKPQLSSFESSQVAETNVIETERKVDVNPPESTVIIIQAAIRGLLAQRELLQLKKVVKLQAAVRGHLVRRHAVGTLRCVQAIIKMQVLVRTRRARQSRLENHLNHKDGERDSSEALGNENHMTKSNVNYTSIEKLLSNRFACQLLESTPRNKPIHVKCDPSKADSAWKWLERWMSVSSKEVSSKDIAECKETTSLTEQSSESKDTASVFQFETGIPSEPFLQSDDSKPTVGDSHLPSEHEEKVITYDVNNFEFQASCFMSSIVKDDLEQIPPEEKIAYDAKVAPADADSFQNENSASDASTPPELISLHKGPEISPSSEHNSLHEGPEIAPPSEHDSLHKGPEIAPPPELNSFHQKPEIDSEQSKRSMKRFASDQLEAEGKKPVNGSRKVSSPAFIAAQSKFEELSSIANSGRTSSLSYQDSAVESQGDTSSVGNDTAYRSKEFAFENPAPYLSRFAGSECGTELSISSTLDSPDISEPGAMENERDAKDLVEGIGNLENTINRDDEANVSCAIPASNLAPSVLDQSEIVDDISSNLDHSIVAMDSEEPAIKTEKNASDLQREHAEAVLQDLRSSPEASPRSHLTVPESQGTPSSQVSVKPKESKINKNRSGNKRRSLSLSNKSPTNPNHDSGSRGSREQLPKDQQNGKRRNSFGSVKPDHIDQEPRDNSTDNNSLPHFMQATESARAKINANNSPRSSPDVHERDIEVKKRHSLPGAAGRQVSPRIQQTSKAQQSAKGNNVHPPQERKWLR 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3955 846 ProSiteProfiles IQ motif profile. 146 175 IPR000048 GO:0005515
Ssu1g3955 846 MobiDBLite consensus disorder prediction 669 696 - -
Ssu1g3955 846 MobiDBLite consensus disorder prediction 502 530 - -
Ssu1g3955 846 MobiDBLite consensus disorder prediction 560 579 - -
Ssu1g3955 846 SMART iq_5 146 167 IPR000048 GO:0005515
Ssu1g3955 846 SMART iq_5 123 145 IPR000048 GO:0005515
Ssu1g3955 846 Pfam Protein of unknown function (DUF4005) 758 830 IPR025064 -
Ssu1g3955 846 MobiDBLite consensus disorder prediction 817 836 - -
Ssu1g3955 846 MobiDBLite consensus disorder prediction 194 215 - -
Ssu1g3955 846 Pfam IQ calmodulin-binding motif 128 144 IPR000048 GO:0005515
Ssu1g3955 846 Pfam IQ calmodulin-binding motif 148 165 IPR000048 GO:0005515
Ssu1g3955 846 MobiDBLite consensus disorder prediction 748 762 - -
Ssu1g3955 846 MobiDBLite consensus disorder prediction 449 478 - -
Ssu1g3955 846 PANTHER IQ-DOMAIN 5-RELATED 1 836 - -
Ssu1g3955 846 MobiDBLite consensus disorder prediction 707 729 - -
Ssu1g3955 846 MobiDBLite consensus disorder prediction 763 792 - -
Ssu1g3955 846 MobiDBLite consensus disorder prediction 662 846 - -
Ssu1g3955 846 ProSiteProfiles IQ motif profile. 125 152 IPR000048 GO:0005515
Ssu1g3955 846 MobiDBLite consensus disorder prediction 793 809 - -
Ssu1g3955 846 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 193 IPR027417 -
Ssu1g3955 846 Gene3D - 124 172 - -
Ssu1g3955 846 MobiDBLite consensus disorder prediction 383 485 - -
Ssu1g3955 846 PANTHER PROTEIN IQ-DOMAIN 32 1 836 - -
Ssu1g3955 846 MobiDBLite consensus disorder prediction 194 211 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3955 114 846 IQD Protein Family AT1G19870 35.389 9.41e-105 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3955 - - gmx:100799424 1413.67