Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3953 ATGATATGGCTGTGGAGGAAAGTAATGTTTCCTCTCACGTTCCTTCCCCTTCTTCTCTGCCCCTCAATAGAGGGCATGCCCTTCTTCCTCCTAGGAAGGGACACAGGCGCTCCAGCAGTGATTCCCCTTTGGGAATCTCTGGTTTTATGCAGTCTTCTCCGGTTTCTTCTGGAGGAGAGAGCTCGGGTTTCAGGGAAGCCGATTCAGTTAGTCTTGAAGGCGTCGGTTAAGGACGGCCTGGACGGGGATTGTACTAATGAGCCTGTGAATATGAGGAAGGAGGAGGCTGCGGATGATTTGTTCAGGGAATACATGAATTTGGACAACATTGATAGTCTGAACTTTCCTGGCGTGGAAGATAAGGATTTGGATAGCAGGACCAGCGGTTCCAAGACGGTTGAGAGCAGCGATAATGAAGTTGAGAGTCATTCGAATGGGAAAGCGAGTGGGGCTCATGGGGCAAGTTCGAGCTGTTTGGAGGAAAGGAGGGAAGGGGTCAAGAGGAGTTCAAATGGGGACGTTGCACCGGGTTCCCGGCACCGGAGGAGTTTCTCGTTGGATAGTTCCATAGGGAACTTTCAGATTGAAGATGGATTGCCTAAGCTTCCTCctttgaaaaatcaaattggCCAACACTCACCTAGCAATTCAATGGATGGCAAAATGTCAGAAACCGCCACGGAGTTTGGAAATGGCGAATTTAGTGCAGATGaggtaaagaaaataatggaaagTGATAAACTAGCTGAAATTGCCTCTGCTGATCCCAAACGTGcaaaaagGATTTTGGCTAACCGTCAATCAGCTGCTCGTTCAAAGGAGAGGAAGATGCGATACATTGTTGAATTGGAACACAAAGTGCAAACTCTTCAGACAGAAACAACCACATTGTCTACTCAGTTTACCAAATTACAGAGGGATAACTCTGAGcttaaaaatgagaataatgaGTACAAATTAAGGCTTCAAGCTATGGAACAACAATCTCAATTGAAAGATGCTCTGAATGAGACTTTGGATGCTGAAGTCAGGCGTTTGAGGCGTGCTGTTGCAGAACTTGGTGGGGAATCCCTTACGAGTTGCATGGCTCGACAGCTTGCTATTAACCAACAAATGTTCCAGTTACAGCATCAGCAGCCCAGCCAGCAGAGACATTTTCTACTTCAAAATCACCATAGTCAGGAAGAGATAGAGTCTCAATCACACCAGATTCAAGGCAATGAATTGCATCCCCAGGCACAGATTCAGTCACGGCAGATTCAGCACAATGAATTGCATCCCCACCCATAA 1290 0.4504 MIWLWRKVMFPLTFLPLLLCPSIEGMPFFLLGRDTGAPAVIPLWESLVLCSLLRFLLEERARVSGKPIQLVLKASVKDGLDGDCTNEPVNMRKEEAADDLFREYMNLDNIDSLNFPGVEDKDLDSRTSGSKTVESSDNEVESHSNGKASGAHGASSSCLEERREGVKRSSNGDVAPGSRHRRSFSLDSSIGNFQIEDGLPKLPPLKNQIGQHSPSNSMDGKMSETATEFGNGEFSADEVKKIMESDKLAEIASADPKRAKRILANRQSAARSKERKMRYIVELEHKVQTLQTETTTLSTQFTKLQRDNSELKNENNEYKLRLQAMEQQSQLKDALNETLDAEVRRLRRAVAELGGESLTSCMARQLAINQQMFQLQHQQPSQQRHFLLQNHHSQEEIESQSHQIQGNELHPQAQIQSRQIQHNELHPHP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3953 429 SUPERFAMILY Leucine zipper domain 257 313 IPR046347 GO:0003700|GO:0006355
Ssu1g3953 429 MobiDBLite consensus disorder prediction 392 429 - -
Ssu1g3953 429 PANTHER BZIP TRANSCRIPTION FACTOR 54 423 - -
Ssu1g3953 429 Coils Coil 332 356 - -
Ssu1g3953 429 SMART brlzneu 253 317 IPR004827 GO:0003700|GO:0006355
Ssu1g3953 429 CDD bZIP_plant_RF2 258 330 IPR044759 GO:0003700|GO:0006355
Ssu1g3953 429 Coils Coil 301 328 - -
Ssu1g3953 429 MobiDBLite consensus disorder prediction 399 422 - -
Ssu1g3953 429 Gene3D - 257 310 - -
Ssu1g3953 429 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 255 318 IPR004827 GO:0003700|GO:0006355
Ssu1g3953 429 MobiDBLite consensus disorder prediction 118 186 - -
Ssu1g3953 429 Pfam bZIP transcription factor 257 315 IPR004827 GO:0003700|GO:0006355
Ssu1g3953 429 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 54 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3953 Ssu-Chr1 97900927 97903791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3953 84 374 bZIP Transcription Factor Family AT4G38900 53.443 1.13e-78 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu1g3953 bZIP_1 4.5e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3953 - - gmx:100779731 584.719