Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3952 ATGGATGATGCTGGGCATCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTGCTCAGGGACAgTGGTTGATGCAACATCAACCTTCCATGAAGCAGATTATGGCAATTATGGCTGAAAGAGATGCAGCCATTCAAGAGAGAAATCTGGCCATTTCCGAGAAAAAGGCAGCATATGCTGAGCGTGACATGGCATTCCTGCAGCGAGATGCTGCGTTTGCAGAACGAAATGATGCAATTTTGGAACGAGATAATGCGATTGCAACTCTTCAGTATCGAGAATCCTCCTTAACTAGTGGCGGTATGCCATCATGCCCACCAGGATGCCAAATTTCACGTGGTGTCAAGCATATACATCATCCCCAGCAACAGGTACACCATTTACCTAACATGGGTGACGCTTCTTACAGCACACGGGAAATGCACGCAACTGATGCCCTCCCTGCAGCCCCCATCCCTTCTGAGTCCGGGAAATCAAGGCGGGCCAAACGACCAAAGGAACCAAAGTCAACTTCACCTAATAAGAAGACTTCAAAAGCAGCAAAAAAAGTCAAGAAGGAGAGCGAAGACTTGAATAAGATTATGTTTGGCAAGGCACATGAGTGGAAGAGTGGTCAGGAAATGGTCAATGGAGGTGATGATCTTAACAAGCAGTTAGCAGTGTCAAAGGCTGATTGGAAAGGTCAGGACTTGGGGTTGAACCAAGTGGCTTATGACGAGTCAACCATGCCAGCACCAGTATGCTCTTGTACTGGTGTTCTGAGGCAGTGTTACAAATGGGGTAATGGGGGTTGGCAGTCTGCCTGTTGCACAACTACTCTGTCAATGTATCCACTTCCTGCAGTGCCCAACAAGAGGCATGCTCGGGTAGGCGGTCGGAAGATGAGTGGGAGCGCTTTCAACAAGCTGCTTAGTCGCCTTGCAGCAGAAGGTCATGATCTGTCAAACCCTGTTGACCTCAAGGACCATTGGGCCAAACATGGAACAAACCGATACATCACAATAAAGTAG 1014 0.4763 MDDAGHRENGRHKADQYKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFLQRDAAFAERNDAILERDNAIATLQYRESSLTSGGMPSCPPGCQISRGVKHIHHPQQQVHHLPNMGDASYSTREMHATDALPAAPIPSESGKSRRAKRPKEPKSTSPNKKTSKAAKKVKKESEDLNKIMFGKAHEWKSGQEMVNGGDDLNKQLAVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3952 337 Pfam GAGA binding protein-like family 1 337 IPR010409 -
Ssu1g3952 337 PANTHER - 1 206 IPR010409 -
Ssu1g3952 337 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 206 - -
Ssu1g3952 337 MobiDBLite consensus disorder prediction 158 174 - -
Ssu1g3952 337 MobiDBLite consensus disorder prediction 1 15 - -
Ssu1g3952 337 MobiDBLite consensus disorder prediction 148 190 - -
Ssu1g3952 337 MobiDBLite consensus disorder prediction 1 21 - -
Ssu1g3952 337 PANTHER PROTEIN BASIC PENTACYSTEINE6 212 337 - -
Ssu1g3952 337 Coils Coil 58 78 - -
Ssu1g3952 337 SMART GAGA_bind_2 1 337 IPR010409 -
Ssu1g3952 337 PANTHER - 212 337 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3952 Ssu-Chr1 97882488 97883651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3952 65 337 BBR or BPC Transcription factor family AT5G42520 65.172 3.59e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Ssu1g3952 GAGA_bind 3.3e-110 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3952 - - gmx:100783502 635.95