Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3948 ATGAGCAGAAGACCACCACCTGATCCCGTGGCAGTGCTACGAGGCCATCGAGCTTCGGTCACAGACATTTCTTTTCATTCCTTTAAGCCAATATTATTCTCCGGTTCTGCTGATGGTGAAGTGCGGATTTGGGATACTCTTCAGCATCGGACAGTGTCATCTGCATGGTTACATAGTGCCGCACATGGTATTGTTGCTGTTGCCAGTAGTTCTTCCCTCGGAACCAATAAATTTCTCAGTCAGGGTAGAGATGGAACTGTAAAAGTTTGGGAATTTGATGATGCTGGTTTGTCCAGCTTACTTTCTGTTGATCTGCACCCCAAACCCAGGATTCCATTACTTACAATCAAGACAAACACTTACCACTTTTGCAAGTTTTCCACAGTGAAGAATCGTTCTGTTTGGTCGAAAGAAGGGGAAGCGTCAAAAGATTGCTATAGAACAGAGCTAGGAGGAATGTCTGATAGAGAAATTCTGGAGGTTAAAAGAGAAGAGGCTTACACCAATCAAAGTTGTTCTGAAAGCTTTGGAGAAAATATGTGTAATGAAGGGCTACAATATGTGGCTTTATCAGGGGAAAACTCTTCTGAGGTTGAAATCTGGGATCTCAAGTCAGCTGAAAAATTTGTACAACTGCCTTCAAGCAATCCTAGTAACTCTTCAAGTGTTTGCAACAAAGGGATGTGCATGGCACTTCAATTGTTTTTACCATCTGAATCACAAGGATTTTTAAATGTCTTGGCTGGATACGAGGATGGTTCCATGCTTTGGTGGGATGTACGGAATCCTGGAGTTCCATTAACTTCTGTAAAATTCCATTCTGAGCCAGTTCTGAGCATCTGTATTGATGGGTCTTGCAAAGGAGGTATCTCAGGAGCTGCAGATGACAAAATTGTAATGTACAGCTTGGATTATTCTTCGGGTACATGTGTGGTGAAGAAAGAAATCAGTTTGGAGCGACCAGGCATCTCGGGCACCTCAATTCGGCCTGATGGAAAAATTGCTGCAACTGCTGGTTGGGACCACAGGGTGAGGATATATAATTACCGCAAAGGAAATGCTTTAGCTATTTTAAAGTATCACCATGGCACGTGCAATGCTGTAACTTATTCGTCTGATTGTAAACTTATGGCCTCTGCATCAGAAGATACAACAGTGGGGCTATGGGAATTGTATCCTCCTCGAATATGA 1191 0.4291 MSRRPPPDPVAVLRGHRASVTDISFHSFKPILFSGSADGEVRIWDTLQHRTVSSAWLHSAAHGIVAVASSSSLGTNKFLSQGRDGTVKVWEFDDAGLSSLLSVDLHPKPRIPLLTIKTNTYHFCKFSTVKNRSVWSKEGEASKDCYRTELGGMSDREILEVKREEAYTNQSCSESFGENMCNEGLQYVALSGENSSEVEIWDLKSAEKFVQLPSSNPSNSSSVCNKGMCMALQLFLPSESQGFLNVLAGYEDGSMLWWDVRNPGVPLTSVKFHSEPVLSICIDGSCKGGISGAADDKIVMYSLDYSSGTCVVKKEISLERPGISGTSIRPDGKIAATAGWDHRVRIYNYRKGNALAILKYHHGTCNAVTYSSDCKLMASASEDTTVGLWELYPPRI 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3948 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Ssu1g3948 396 ProSitePatterns Trp-Asp (WD) repeats signature. 377 391 IPR019775 -
Ssu1g3948 396 SUPERFAMILY WD40 repeat-like 4 390 IPR036322 GO:0005515
Ssu1g3948 396 PANTHER TRANSDUCIN BETA-LIKE 3 3 395 - -
Ssu1g3948 396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 358 396 - -
Ssu1g3948 396 Gene3D - 6 232 IPR015943 GO:0005515
Ssu1g3948 396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Ssu1g3948 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 396 IPR001680 GO:0005515
Ssu1g3948 396 SMART WD40_4 351 390 IPR001680 GO:0005515
Ssu1g3948 396 SMART WD40_4 6 45 IPR001680 GO:0005515
Ssu1g3948 396 SMART WD40_4 309 348 IPR001680 GO:0005515
Ssu1g3948 396 SMART WD40_4 263 302 IPR001680 GO:0005515
Ssu1g3948 396 SMART WD40_4 48 91 IPR001680 GO:0005515
Ssu1g3948 396 PANTHER - 3 395 - -
Ssu1g3948 396 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Ssu1g3948 396 Pfam WD domain, G-beta repeat 355 389 IPR001680 GO:0005515
Ssu1g3948 396 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Ssu1g3948 396 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Ssu1g3948 396 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Ssu1g3948 396 Gene3D - 233 395 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3948 246 395 U-box Gene Family AT2G33340 26.623 2.92e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3948 K24770 - gmx:100800482 718.768