Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3946 ATGGCAACAACGGTTATATTCTTCAGCCTCACATTAGTCGCGTACTTCGCCACCTCAACCAGCGGCCAGAACAACACCGCGTTAGAGATTGAAGCCTTGACCGCATTCAAGCGCAACCTCCAAGACCCTCTCGGTTCCTTGGACGGTTGGGATCCTTCCACGCCATCAGCACCCTGCGACTGGCGCGGCATTACGTGTCACAACAACCGAGTCCGCCAGCTCCGTTTGCCGCGTCTCCAACTCGCGGGTCAACTCGCTCCCTCCCTCTCCAACCTCCTTCAACTCCGCAAACTCAGCCTCCACTCCAACAACCTCGACGCCTCCATCCCAAACTCTCTCGCGCGATGCCTCTTCCTCCGCGCCGTCTACCTCCACAACAACAACCTCTCCGGCGAGCTCCCGCCGCCGCTGCTCAACCTCACCAACCTCCAAATCCTCAACGTCGCTCACAACCTCCTCTCCGGAAAAATCTCCGGCCACCTCTCCGCCTCACTCCGGTTCCTCGACCTCTCCTCGAACGCATTCTCCGGCGACATTCCGGCGAACTTCTCGTCCGAGTCTCAGCTCCAGCTCATTAACCTCTCGTACAACGGCTTCACCGGAGGAATACCTGCCTCCGTCGGGGCGCTGCAAAACCTTCAATATCTATGGTTAGACTCGAACCGCATTCACGGAACcctgccttcggctctcgcgaACTGCTCCTCTCTGGTGCACCTTACCGCAGAGGATAACGCTCTCTCTGGAGTTCTTCCTCCCACCGTGGGGGCCATGCCGAAGCTTCAAGTGCTGTCGCTTTCGCGGAACCAGTTTTCCGGTTCGGTCCCCGCGTCCGTGTTCTGCAACGCGCACCTGCGAAGCGTGAAGCTCGGGTTTAATTCTTTCACGGGGGTTTACGCGCCGCAAAGTGGGGGATGCGACAGCGTTTTGGAGGATTTGGACATTAGAGAGAATCGCGTCGCCCACGCGCCGTTTCCCTCGTGGTTGACCCACGCGACGACGCTGAAGGCTCTCGATGTTTCTGGAAACTTCTTCACCGGTTCTCTGCCGGTGGACATTGGGAACCTCTCCGCGTTGGAGGAATTTAGAGTGGCGAATAATTTGTTATCCGGTGGAGTTCCGCGTGGCATTGTGAATTGTAGGTCGTTAAAGGCTCTTGATCTTGAGGGTAACCAGTTCTCTGGGTTAATTCCAGAGTTTCTCGGGGAACTGAGGAACCTGAAGGAGTTGTCTCTTGCCGGTAACCTTTTTACCGGTTCGGTGCCTTCTAGTTATGGGACTCTTTCTGCGCTTGAGACGCTGAATTTGAGTAATAATAAGTTATCCGGTGTGGTGCCTGAGGAGATCATGCAATTGGGGAACGTGAGTGCTTTGAATCTCAGCAATAACAAGTTTTCGGGTCAAGTTTGGAATAATATTGGGGACTTGGCGGGTTTGCAGGTTCTTAATTTGAGTCAATGTGGGTTTTCGGGAAGGGTTCCTGCTACGTTGGGGAGTTTGATGAGACTAACCGTGTTGGATTTGAGCAAGCAGAACCTCTCGGGTGAGTTGCCCGTTGAGGTTTTCGGGTTACCGGGTCTGCAAGTTGTGGCGCTTCAAGAGAACCGTTTCAGTGGTGATGTTCCTGAGGGTTTCAGCAGCATAGTTAGTCTAAGGTATCTTAATCTCAGTTCAAATGGGTTTGTTGGTGACATTCCAATAACCTATGGGTTCCTTGGTTCTTTGACGGCTCTCTCTTTGTCTCACAATGGTGTTTCTGGTGAAATACCTCCCGAGATTGGTGGTTGTTCGCAACTTGAAGTTTTGCAGCTGCAGTCAAATCTTCTAGAGGGTAACATTCCGGGTAATATCTCTCGGCTCTCTCGTTTAAAGGAGCTTAATCTGGGGCACAATAGGTTGAAAGGTGATATCCCAGATGAAATATCAGAGTGTTCTGCTTTGACTTCGCTCTTGTTGGATGGTAATCACTTCACGGGTCATATACCAGGTTCCTTGTCAAAGATATCAAATTTGACCGTGTTGAACCTTTCTTCAAATCTCTTGAGTGGGAAAATTCCGGTTGAACTATCAAGCATTTCTGGTTTGGAGTATTTAAATGTGTCTGGTAATAACCTTGAGGGTGAGATTCCGTACATGCTTGGTGCTAGATTCAACGACCCTTCTGTGTTTGCAATGAACCAAGGTTTATGCGGGAAACCCTTGCGCAAAGAATGCGCAAATataagaaggagaaagaagagaaggcTAGTAATGTTCATAGGCGTGGCCGTGGCTGGGCTATGCCTTTTGGCGTTGTGTTGTTGCGGCTACGTTTACAGCCTCTTGAGGTGGCGCAGCAAGCTTCGAGAAGGGGTGACGGGTGAGAAGAAACGGAGCCCCACAACAAGCGTGGGAGGAGAGAGAGGTAGTAGAGGGAGTGGGGAAAACGGAGGACCAAAACTAGTGATGTTCAACAACAAGATCACGTACGCGGAGACATTGGAAGCAACGAGAAACTTCGACGAAGAGAACGTGTTGAGCAGGGGAAGATACGGCCTCGTGTTCAAAGCCTCCTACCAGGATGGAATGGTTCTCTCCCTTCGTCGCTTAGTTAATGGATTCATAGACGAGGGTACCTTCCGCAAGGAAGCAGAATCACTAGGCAAAGTGAAGCATCGAAACTTGACAGTTTTACGTGGTTACTATGCAGGACCACCACCCGATGTGAGGCTTCTTGTGTATGACTACATGCCCAATGGGAACCTAGGGACGCTGCTTCAAGAGGCGTCTCAGCAAGATGGCCATGTGCTGAATTGGCCAATGCGTCACCTCATTGCACTAGGCATTGCTCGAGGACTAGCTTTCTTGCACTCGGTGCCAATTGTTCACGGTGACGTGAAGCCTCAGAATGTTCTTTTTGACGCGGATTTTGAGGCCCATTTGTCTGAATTTGGGTTGGAGCGGTTGACAATAGCAGCGGCAGCAGAAGCATCCTCGTCGTCGACCCCAGTTGGGTCCTTAGGGTATGTGTCGCCAGAAGCTGCATTGAGTGGGGTGGCCACAAAGGAGGGTGATGTGTATAGCTTTGGGATTGTGTTGTTGGAGATACTGACGGGGAAGAAACCGGTGATGTTCACGGAAGATGAGGACATAGTGAAGTGGGTGAAGAGGCAGTTACAAAGGGGCCAAATCTCGGAGTTGTTGGAGCCGGGGTTGCTTGAGCTTGACCCAGAGTCTTCGGAATGGGAAGAGTTTTTGTTGGGTGTGAAAGTTGGTCTCCTATGCACAGCAACGGATCCGCTTGATCGACCATCTATGTCTGATGTTGTTTTCATGCTCCAAGGTTGCCGGGTCGGACCGGAGATCCCATCATCAGCTGATCCCACAACACTACCCTCCCctgcttga 3387 0.5075 MATTVIFFSLTLVAYFATSTSGQNNTALEIEALTAFKRNLQDPLGSLDGWDPSTPSAPCDWRGITCHNNRVRQLRLPRLQLAGQLAPSLSNLLQLRKLSLHSNNLDASIPNSLARCLFLRAVYLHNNNLSGELPPPLLNLTNLQILNVAHNLLSGKISGHLSASLRFLDLSSNAFSGDIPANFSSESQLQLINLSYNGFTGGIPASVGALQNLQYLWLDSNRIHGTLPSALANCSSLVHLTAEDNALSGVLPPTVGAMPKLQVLSLSRNQFSGSVPASVFCNAHLRSVKLGFNSFTGVYAPQSGGCDSVLEDLDIRENRVAHAPFPSWLTHATTLKALDVSGNFFTGSLPVDIGNLSALEEFRVANNLLSGGVPRGIVNCRSLKALDLEGNQFSGLIPEFLGELRNLKELSLAGNLFTGSVPSSYGTLSALETLNLSNNKLSGVVPEEIMQLGNVSALNLSNNKFSGQVWNNIGDLAGLQVLNLSQCGFSGRVPATLGSLMRLTVLDLSKQNLSGELPVEVFGLPGLQVVALQENRFSGDVPEGFSSIVSLRYLNLSSNGFVGDIPITYGFLGSLTALSLSHNGVSGEIPPEIGGCSQLEVLQLQSNLLEGNIPGNISRLSRLKELNLGHNRLKGDIPDEISECSALTSLLLDGNHFTGHIPGSLSKISNLTVLNLSSNLLSGKIPVELSSISGLEYLNVSGNNLEGEIPYMLGARFNDPSVFAMNQGLCGKPLRKECANIRRRKKRRLVMFIGVAVAGLCLLALCCCGYVYSLLRWRSKLREGVTGEKKRSPTTSVGGERGSRGSGENGGPKLVMFNNKITYAETLEATRNFDEENVLSRGRYGLVFKASYQDGMVLSLRRLVNGFIDEGTFRKEAESLGKVKHRNLTVLRGYYAGPPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLERLTIAAAAEASSSSTPVGSLGYVSPEAALSGVATKEGDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKRQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTATDPLDRPSMSDVVFMLQGCRVGPEIPSSADPTTLPSPA 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3946 1128 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1124 - -
Ssu1g3946 1128 Gene3D Ribonuclease Inhibitor 463 747 IPR032675 -
Ssu1g3946 1128 SUPERFAMILY RNI-like 168 490 - -
Ssu1g3946 1128 Gene3D Ribonuclease Inhibitor 379 462 IPR032675 -
Ssu1g3946 1128 Gene3D Ribonuclease Inhibitor 303 378 IPR032675 -
Ssu1g3946 1128 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Ssu1g3946 1128 SUPERFAMILY L domain-like 452 714 - -
Ssu1g3946 1128 SMART LRR_typ_2 92 116 IPR003591 -
Ssu1g3946 1128 SMART LRR_typ_2 140 164 IPR003591 -
Ssu1g3946 1128 SMART LRR_typ_2 428 452 IPR003591 -
Ssu1g3946 1128 SMART LRR_typ_2 210 234 IPR003591 -
Ssu1g3946 1128 SMART LRR_typ_2 524 547 IPR003591 -
Ssu1g3946 1128 SMART LRR_typ_2 356 380 IPR003591 -
Ssu1g3946 1128 SMART LRR_typ_2 620 644 IPR003591 -
Ssu1g3946 1128 SMART LRR_typ_2 572 596 IPR003591 -
Ssu1g3946 1128 SMART LRR_typ_2 258 282 IPR003591 -
Ssu1g3946 1128 SMART LRR_typ_2 404 427 IPR003591 -
Ssu1g3946 1128 SMART LRR_typ_2 668 692 IPR003591 -
Ssu1g3946 1128 SMART serkin_6 833 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3946 1128 ProSiteProfiles Protein kinase domain profile. 833 1115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3946 1128 ProSiteProfiles Leucine-rich repeat profile. 622 644 IPR001611 GO:0005515
Ssu1g3946 1128 Gene3D Phosphorylase Kinase; domain 1 810 909 - -
Ssu1g3946 1128 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Ssu1g3946 1128 Gene3D Ribonuclease Inhibitor 185 302 IPR032675 -
Ssu1g3946 1128 Pfam Protein tyrosine and serine/threonine kinase 836 1053 IPR001245 GO:0004672|GO:0006468
Ssu1g3946 1128 Pfam Leucine rich repeat 405 465 IPR001611 GO:0005515
Ssu1g3946 1128 Pfam Leucine rich repeat 598 657 IPR001611 GO:0005515
Ssu1g3946 1128 Pfam Leucine rich repeat 502 560 IPR001611 GO:0005515
Ssu1g3946 1128 ProSitePatterns Serine/Threonine protein kinases active-site signature. 954 966 IPR008271 GO:0004672|GO:0006468
Ssu1g3946 1128 PANTHER LRR RECEPTOR-LIKE KINASE 3 1124 - -
Ssu1g3946 1128 SUPERFAMILY Protein kinase-like (PK-like) 812 1117 IPR011009 -
Ssu1g3946 1128 MobiDBLite consensus disorder prediction 785 813 - -
Ssu1g3946 1128 SUPERFAMILY L domain-like 29 161 - -
Ssu1g3946 1128 Gene3D Transferase(Phosphotransferase) domain 1 910 1114 - -
Ssu1g3946 1128 ProSiteProfiles Leucine-rich repeat profile. 430 451 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3946 Ssu-Chr1 97754595 97757981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3946 1 1128 Receptor kinase-like Gene Family AT1G75640 63.269 0.0 1348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Ssu1g3946 PK_Tyr_Ser-Thr 3.5e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3946 - - gmx:100801571 1909.42