Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3941 ATGAAGATCCAGTGCGACGTGTGTAACAAACACCAGGCTTCTTTATTCTGCACCGCCGACGAAGCCGCCCTATGCGACGGCTGCGACCACCGCGTCCACCATGCCAACAAGCTCGCCTCCAAACACCAACGCTTCTCCCTCGTCCCCCCCTCTGCAAAGCATTTTCCTCTCTGTGATGTTTGCcagGAGAGAAGAGCTTTTGTGTTTTGTCAGCAAGATAGGGCGGTTCTGTGCAAAGAGTGTGACGTGCCGATTCATTCTGCCAACGACCTAACCAAGAAGCATAACAGGTTTCTTCTGACTGGGATCAAGTTCTCTGCCTACTGCCACGCCTTATACATCACCACCCAAGAAAAGCCCTGTTCTCGATTCTTCCGAGGATTCGCATCCACCTTCGAATTCTCTTTCAACAGCGTCGGCGCCTATTCCTGTCAATAA 438 0.5137 MKIQCDVCNKHQASLFCTADEAALCDGCDHRVHHANKLASKHQRFSLVPPSAKHFPLCDVCQERRAFVFCQQDRAVLCKECDVPIHSANDLTKKHNRFLLTGIKFSAYCHALYITTQEKPCSRFFRGFASTFEFSFNSVGAYSCQ 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3941 145 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Ssu1g3941 145 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Ssu1g3941 145 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Ssu1g3941 145 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 111 - -
Ssu1g3941 145 CDD Bbox1_BBX-like 57 100 - -
Ssu1g3941 145 Gene3D Classic Zinc Finger 1 94 - -
Ssu1g3941 145 CDD Bbox1_BBX-like 5 47 - -
Ssu1g3941 145 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Ssu1g3941 145 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 111 - -
Ssu1g3941 145 SMART bboxneu5 4 47 IPR000315 GO:0008270
Ssu1g3941 145 SMART bboxneu5 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3941 Ssu-Chr1 97669647 97670264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3941 1 107 C2C2-CO-like Transcription Factor Family AT1G75540 69.725 6.93e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Ssu1g3941 zf-B_box 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3941 - - gmx:100794842 221.09