Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3937 ATGGCAGGGTTCTTCTCTCTAGGCGGAACTGGAAGGGGAGGCCCACAAAACAAGGAGGAAGAAGAGGTAGAAAAAGCAGATAACAATAACAGCAGCGGGAATAACCTATTCTTGTTCAGGAACGAGGAGATCTACAACAAGGGGTTCGAGATATGGCCACAGTCGCATCACCATCCTCAGGCACACCAAAACTTGAGCAACTACCTCGCGTTTGGAGTGGGTCCTAGTCGCAGGAATTGCTCAAGCGTTAACGAGGAGGACGTATCCTTCTGTTTGTCTGATGAGTCTACGAGATTTGGATTAACTGTCATGAGGTCTGGAGGCGCAGGAAGCGGTGGCATGAACTGTCAGGACTGCGGGAACCAGGCGAAGAAAGACTGTGTACATCTCAGATGCAGGACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAGACTCACGTCAAGAGCACTTGGGTTCCCGCAGCCAAGCGCCGCGAACGACACCAACAACTCGCTGCGCTGCAGCACCAACAACAACTGCCGGGGGGAGAGAATATTCCTAAACGACATAGAGACACTCAACTTGCCTGCGCTCCCCAACCCATCACCTCCACAgGGTTAGAGCTGGGACAATTCCCACCTGAAGTGAACACTTCGGCGGTGTTTCGGTGTGTGAGAGTCAGCGCAGTGGACGCTTCGGATGAACAGTGCGCGTATCAAACCTCTGTCAACATCGGAGGGCATGTTTTCAAGGGACTTCTCTACGATTACGGTCCTGAAAGTTCTTACAATAGTAGCGCAGCAGCTGAGGGTTCCTCCGGTGGTGAACCTCAACAACTTGGTCTAATAACCGCCACAACCGCTGCCACAACCAGTGGGAACCCTTTTGACCCTTTACTTTACCCCGCTCCGCTGAATGCTTTCATGGCTGGTACGCAATTCTTCCAACCCCCAAGATCCTAG 942 0.5234 MAGFFSLGGTGRGGPQNKEEEEVEKADNNNSSGNNLFLFRNEEIYNKGFEIWPQSHHHPQAHQNLSNYLAFGVGPSRRNCSSVNEEDVSFCLSDESTRFGLTVMRSGGAGSGGMNCQDCGNQAKKDCVHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERHQQLAALQHQQQLPGGENIPKRHRDTQLACAPQPITSTGLELGQFPPEVNTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGLLYDYGPESSYNSSAAAEGSSGGEPQQLGLITATTAATTSGNPFDPLLYPAPLNAFMAGTQFFQPPRS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3937 313 Pfam Domain of unknown function (DUF702) 113 253 - -
Ssu1g3937 313 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 311 IPR007818 GO:0003700|GO:0006355
Ssu1g3937 313 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 204 252 IPR006511 -
Ssu1g3937 313 MobiDBLite consensus disorder prediction 1 34 - -
Ssu1g3937 313 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 311 - -
Ssu1g3937 313 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 115 157 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3937 Ssu-Chr1 97528849 97530282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3937 1 313 C2H2 Transcription Factor Family AT1G75520 44.789 1.42e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ssu1g3937 DUF702 7.3e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3937 - - gmx:100805274 425.246