Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3936 ATGGTGAATGAAGGTCGTTTTCTTCCCACGATGGATCTGCTACGGTCGGAGCCTATGCAACTGGTTCAATTGATCATTCCAATCGAATCAGCTCATCGATCCATCTCTTACCTTGGCGATCTCGGCCTCTTCCAATTCAAAGATCTCAATGCAGATAAAAGCCCATTCCAGCGAACTTATGCCACTCAGATTAAAAGATGTGGGGAAGTGGCACGTAGGCTACGGTTGTTTAAGGAACAAATGACGAAAGCAGGTGTATCACCCTCAGTGCGGTCAACAAGAGCCGGTGATGTTGATCTGGAAAATTTGGAGGTTAAACTTGAAGAACTTGAAGCTGAGCTACTCGAGATTAACGGAAATAATGAGAAGTTGCAACACACTTACAATGAGCTATTAGAGTATAAGCTTATTCTAGAGAAGGTTGGTGAGTTTTTCTCCTTAGCAAAAAATAAAGCTGTAGCTCACCAGAGAGAGCTTGAAGTCCAGACAACTGTTGAAGGCTCTATTGACAGCCCATTATTACTTGAACAAGAGGAGACGACAACATTAAAGCAGATTAAGCTGGGGTTTATTAGTGGACTTGTTCCAAGGGAAAAATCAATTCCTTTCGAAAGAATTCTATTTCGTGCTACTAGGGGAAATGTGTTTCTCAAACAGGCTGTGGTTGAACATCCTGTTCTTGATCCTTTGTCAGGAGGGAagGttcataaaaatgtatttgttgTCTTTTATTCTGGAGAGAGAGTTAAAAGTAAAATTCTGAAAATATGTGATGCTTTTGGAGCAAATCGTTATCCTTTCTCGGATGACTTGAGTAAACAACTTCAGACGATAACAGAGGTTTCAACAAGACTTTCAGAATTGAAGACTACCATTGATGCAGGATTGCTTCATCGGAGCACTCTATTGCAGACAATTGGATATCACTATGAGCAGTGGAGCCTTCAGTTGAAGAAGGAAAAATCCATTTATCACACTCTAAATATGCTTAGCATTAATGTGACAAAGAAATGTCTCCTTGCAGAAGGTTGGTGTCCTGTTTTTGCGACAAGTCAGATTCACAAAGTATTGCAGCGGGCAACTATGGAATGCAACTCTCAAGTTGGGGCGATATCTCAGGTTTTACAGACAAAGGAATCACCGCCTACCTATTTTTGCACAAACAAATTCACTTCTTCTTTTCAAGAAATTGTAGATGCCTATGGAGTCGCCAAGTACCAGGAAGCAAATCCTGGCTTATACACAATTATCACGTTTCCATTCCTTTTTGCTGTAATGTTTGGTGACTGGGGGCATGGCATATGCTTATTACTGGCGGGTTTGTATTTCATAatcagagagaaaaaaatttcttgtcaGAAACTTGGAGACATAATGGAAATGGCTTTCGGCGGACGCTATGTTATTACGATGATGGCACTCTTCTCAATCTATACCGGGTTGATATATAATGAATTCTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCCTATGGATGTCGTGATCATTCATGCAGGGATGCTTCTACAACAGGTTTAATAAAAGTGCGCGGCACTTATCCTTTTGGTGTGGATCCTAAATGGCATGGTACTCGGAGTGAGCTGCCATTTCTTAATTCTTTGAAGATGAAAATGTCAATTCTGCTGGGGGTATCCCAGATGAATCTAGGAATCATAATGAGTTATTATAATGCAAAATACTTCGAAAACTACATAAATATCTGGTACCAGTTCGTTCCCCAGGTGATATTCTTAAACAGCTTGTTTGGCTACCTTTCACTCCTCATAATTATCAAATGGTGGACTGGATCACAGGCTGACCTGTATCATGTCATGATATACATGTTCCTAAGCCCAACTGATGATTTGGGTGAAAACCAGCTTTTTGTTGGTCAAAAGTTCCTTCAaCTCGTGTTACTACTGTTGGCACTTGTTGCTGTACCTTGGATGCTATTACCAAAGCCCTTTCTCCTGAAGAAGCAACATCAAGAAAGGCACCAAGGTCAATCTTACTCCTTGCTCTATGGCACGGATGACCCTCTCGAAACAGAGTCACATAGTATTCCCCATAACCATGACGAGTTTGAGTTCAGCGAGGTTTTTGTGCACCAACTTATACATACAATAGAATTTGTGCTTGGAGCTGTGTCTAATACAGCTTCGTATCTACGTTTATGGGCCCTCAGCCTAGCTCATTCGGAGTTGTCCAGTGTTTTCTATGACAAGGTTCTGCTTCTGGCCTGGGGGTTTAATAACACTATTGTTCTCATTGTtggcatttttgtttttatatgtgCAACTGTTGGTGTGTTACTGTTAATGGAAACTCTAAGTGCTTTCTTGCATGCTTTGAGACTTCACTGGGTAGAGTTCCAGAACAAATTTTATGAGGGAGATGGTTACAAGTTCTTCCCGTTTTCATTTACATTACTCACGGATGAGGATGACCTGTAA 2457 0.4005 MVNEGRFLPTMDLLRSEPMQLVQLIIPIESAHRSISYLGDLGLFQFKDLNADKSPFQRTYATQIKRCGEVARRLRLFKEQMTKAGVSPSVRSTRAGDVDLENLEVKLEELEAELLEINGNNEKLQHTYNELLEYKLILEKVGEFFSLAKNKAVAHQRELEVQTTVEGSIDSPLLLEQEETTTLKQIKLGFISGLVPREKSIPFERILFRATRGNVFLKQAVVEHPVLDPLSGGKVHKNVFVVFYSGERVKSKILKICDAFGANRYPFSDDLSKQLQTITEVSTRLSELKTTIDAGLLHRSTLLQTIGYHYEQWSLQLKKEKSIYHTLNMLSINVTKKCLLAEGWCPVFATSQIHKVLQRATMECNSQVGAISQVLQTKESPPTYFCTNKFTSSFQEIVDAYGVAKYQEANPGLYTIITFPFLFAVMFGDWGHGICLLLAGLYFIIREKKISCQKLGDIMEMAFGGRYVITMMALFSIYTGLIYNEFFSVPFELFGPSAYGCRDHSCRDASTTGLIKVRGTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVSQMNLGIIMSYYNAKYFENYINIWYQFVPQVIFLNSLFGYLSLLIIIKWWTGSQADLYHVMIYMFLSPTDDLGENQLFVGQKFLQLVLLLLALVAVPWMLLPKPFLLKKQHQERHQGQSYSLLYGTDDPLETESHSIPHNHDEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGFNNTIVLIVGIFVFICATVGVLLLMETLSAFLHALRLHWVEFQNKFYEGDGYKFFPFSFTLLTDEDDL 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3936 818 PIRSF ATP6V0A1 9 818 IPR026028 GO:0000220|GO:0046961
Ssu1g3936 818 PANTHER VACUOLAR PROTON ATPASES 11 818 IPR002490 GO:0033179|GO:0046961|GO:1902600
Ssu1g3936 818 Pfam V-type ATPase 116kDa subunit family 37 809 IPR002490 GO:0033179|GO:0046961|GO:1902600
Ssu1g3936 818 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 11 818 - -
Ssu1g3936 818 Coils Coil 93 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3936 Ssu-Chr1 97495785 97505509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3936 11 817 Primary Pumps ATPases(2) AT4G39080 74.257 0.0 1251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3936 K02154 - gmx:100805813 1443.71