Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3927 ATGCTGAAATCGGGCATGGGAATTGAGGAGAGAAAGCAGCCGAAGAAACCAGCACAGGCCAGCTCCAGAAAGGGGTGTATGAGAGGCAAAGGAGGCCCTGAGAACGCGCGTTGCACCTACAAAGGTGTGAGACAGAGAACCTGGGGGAAATGGGTCGCTGAAATACGCGAACCCAATCGAGGTGCTCGTCTCTGGCTCGGGACATTTGAGACCTCTCATGAGGCCGCTTTGGCTTATGATGCTGCGGCACGCAAGCTTTATGGCTCAGATGCCAAACTCAATTTACCAGAACTCTCTGTGTCCTCTATGAAATCTCAATCTCAGTATCCACCACCATCTTCAGCTACCAACACTCAATTTCTTCAAATGGAGAACCTGCAGCAGCCACAGATTCAAAACAACATAGACATGGCCACTTGTTCCAATTTCAACACCAATCCTGCAGCCTCCATGGCCTCTCAGCAAGTTGGAGTTGGACCAATTTACACCAGTGACTCCATCGTGTCTCTTCCCTTAGATACCAATCCTAAACCAGTTGAAACCACCTATGCAAAACCCGTGGAGAACGAAGGGGAGTTTCGTCCATCGTGGGGTCCAATAAACGAGGGTTTGCCACTTTTTGATGATTCCATTTGGACTGAAGCTGCTATGTCCCTTGATTTTTCTCTAATTGCAGCAGAGACTGGAATTTACACATCAGGGAACAACTTGGCAGATGTGGGTGTGTGGGACTCTCAGCAAACTCCATGGTGCATGTAA 759 0.4888 MLKSGMGIEERKQPKKPAQASSRKGCMRGKGGPENARCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSDAKLNLPELSVSSMKSQSQYPPPSSATNTQFLQMENLQQPQIQNNIDMATCSNFNTNPAASMASQQVGVGPIYTSDSIVSLPLDTNPKPVETTYAKPVENEGEFRPSWGPINEGLPLFDDSIWTEAAMSLDFSLIAAETGIYTSGNNLADVGVWDSQQTPWCM 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3927 252 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D-LIKE 7 247 - -
Ssu1g3927 252 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Ssu1g3927 252 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Ssu1g3927 252 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Ssu1g3927 252 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Ssu1g3927 252 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Ssu1g3927 252 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 247 - -
Ssu1g3927 252 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Ssu1g3927 252 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Ssu1g3927 252 MobiDBLite consensus disorder prediction 1 33 - -
Ssu1g3927 252 MobiDBLite consensus disorder prediction 1 17 - -
Ssu1g3927 252 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3927 Ssu-Chr1 97313362 97314120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3927 13 119 AP2-EREBP Transcription Factor Family AT1G75490 71.963 5.07e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g3927 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3927 - - gmx:100797850 401.749