Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3915 ATGTATCCCAACCAAGCCTTTTCTTCAGGGTCCTATGCGGAGATGATGTCTGGAACTCCTCTGTTACCTCATGACTACAGTGAATCTGTAGGAGGACAAAATGAGGTGAAGTTTATCACAGCCATGGGTGACACAGTGACTATGCAATCTATTAATGGGCATTCCAATGCTGCAACTGGTGATCCAGCATGCAACTCTTTTGCCGGGGATTCCCATGTAAGGACACAAATGGGAATTGTAGATAGTGAGCAAAACATGCAGTGCCAGGGCTTATCTCTCAGTCTCGGGACACTCATGCCTTCTAATGCATCTGTTCCTCCATTTCAATTCCAATATTCTGACACTGGTCTCTTACCACTAATGACTGATTTTCCAAACCTAAAGGGAACTATATCTCTCAAAGATGATGAGGCTAATAACCTACACAAGGAGTTAAGAAGTGCTGAATGCATGGCATCTGTGTCTTCTGGAGGCTTTCATGACATTATCAAAAAGGAGGGTTTTTACAACCCCCACCCCTCAATGTGTCTTAAAGAAGTCCCCTCTGATCCATGCCTGCAAGGATCACCAGCTTACTCAAACGGTATTTTAAACTCCCAATACCTTAAGGCGGCACAGGAGTTGCTTGATGAAATAGTTAGTGCCCGAAAGGTTTTGAAGCAACCTGGAGTGGAAAAACAAGAGAACTGCCGTGACATTGGATTAGATGGCTCTAGAGATTCTGATGGAAAATCCACCAGTGCTAATGGTTCTACTGCCAATGCTTCTTGTGAACTATCACCTGGAGAACGGCAGAACTTGTTGGACAAGAAAACAAAGCTTTTGTCCATGTTGGATGAGGTAGATAAAAGATACAGACAGTACTGCCATCAGATGCAGATTGTGGTGTCATCTTTCGATATGGTTGCTGGGTGTGGAGCAGCAGAACCATATACTACACTTGCTTTAAGAACAATTTCTCGCCACTTTCGGTGTTTGCGTGATGCCATCAGTGGCCAAATTCAAGTGACACAAAGGAGCCTTGGGGAGCAAGAGGGAATACCCCGTCTCCGCTATGTGGATCAGCAACTCAGACAACAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGAGGGCTTCCTGAAAGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCCTTACCCCAAGGATTCAGAGAAAATTATGCTGGCGAGACAAACAGGCTTGACCAGAAACCAGGTGGCAAATTGGTTCATCAATGCGCGGGTGCGTCTTTGGAAGCCAATGGTTGAGGAAATGTACAAAGAGGAGTTTGGAGATTCCGAGATGAACTGCAACCTTTCATCTGAGAACATGGTCAAAGAAATGGATAGAGGGGTCCATGCGGAAAATGTGGCGATGGATTCTGGAACTGGGAAATTGCAGGGTAACCAAAACCAAAGGCTCAGcatgaacaacaacaacaacagcaaccttTATTCTATCTCAACCAACCAGAACGGTGGGGATGGGAGCCTAATGGGTTCTACTCATGCCACATATGATTTATCAGAGTTGGGTAACTTTACTGTGGGAGGCCACGTTTCACTTGCATTGGAGTTGAGGAACTGTGAAAGTGATGGATTTGCCATGTCTGATGATGCCGTCCACAAACGACGTAATCAAACATTGGCCTCTTCCCCGGAGACTGATTTGCTAGATTATCATTTCACGGATTCAGGAAAGCAACAACACAGGTTTGGCAATCCCCATTTGCTGCATGAGTTTGTCGTATGA 1791 0.4461 MYPNQAFSSGSYAEMMSGTPLLPHDYSESVGGQNEVKFITAMGDTVTMQSINGHSNAATGDPACNSFAGDSHVRTQMGIVDSEQNMQCQGLSLSLGTLMPSNASVPPFQFQYSDTGLLPLMTDFPNLKGTISLKDDEANNLHKELRSAECMASVSSGGFHDIIKKEGFYNPHPSMCLKEVPSDPCLQGSPAYSNGILNSQYLKAAQELLDEIVSARKVLKQPGVEKQENCRDIGLDGSRDSDGKSTSANGSTANASCELSPGERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTTLALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMNCNLSSENMVKEMDRGVHAENVAMDSGTGKLQGNQNQRLSMNNNNNSNLYSISTNQNGGDGSLMGSTHATYDLSELGNFTVGGHVSLALELRNCESDGFAMSDDAVHKRRNQTLASSPETDLLDYHFTDSGKQQHRFGNPHLLHEFVV 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3915 596 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 562 - -
Ssu1g3915 596 SUPERFAMILY Homeodomain-like 374 440 IPR009057 -
Ssu1g3915 596 CDD homeodomain 373 434 IPR001356 GO:0003677
Ssu1g3915 596 MobiDBLite consensus disorder prediction 240 259 - -
Ssu1g3915 596 Pfam Associated with HOX 196 331 IPR006563 -
Ssu1g3915 596 SMART prehox3 190 332 IPR006563 -
Ssu1g3915 596 SMART HOX_1 373 437 IPR001356 GO:0003677
Ssu1g3915 596 Pfam Homeobox KN domain 390 429 IPR008422 GO:0003677|GO:0006355
Ssu1g3915 596 ProSiteProfiles 'Homeobox' domain profile. 370 433 IPR001356 GO:0003677
Ssu1g3915 596 Gene3D - 370 447 - -
Ssu1g3915 596 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 28 562 - -
Ssu1g3915 596 MobiDBLite consensus disorder prediction 229 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3915 Ssu-Chr1 97042830 97045666 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3915 191 595 Homeobox Transcription Factor Family AT2G16400 50.239 5.03e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu1g3915 POX 1.3e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3915 - - gmx:100791641 996.882