Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3914 ATGCTTGTCCCTTCTTCTGATGAATACAGACATCATCAAAGACCCTTAAACCCGGGTCTTATCAACCCCAATTACTTTATGTCTGGACAAGAGGCACGTGAGGCTTGTAATCCACCCGTGGAGCATCTAACCAGTGACTACTTTTTCAACACTGGCAGTGGCacatttgcttcttcttctgcCCCTTTGAATCGTTCTGCTTCCACCTCTTATGCTGCTGAGTCTTTTGCTGCTGTCATTGGGAACTCAAGATACCTCAAACCGGTTCAGTCCCTTCTTGAAGATCTTGTTGATGTTGGTGGAAATGTGGTGGATAGAATCAATGAAAAGTATGCTGAGAAGTTGTTTCGTGGGAGTAGAGGAGGTGCTAGGACACTTTCCTCAGAGTTAAAGGCGGAGTTGAGGAACAATGGACCCTTATTGGCTGACAGACATGAACATCAAATCAGAATTGCAAGGTTGATTTCTTTGTTGGATGAGGTTGAGGGTAGGTGTGAGAAATACTACCATCAAATGGAAGAAGTGGTGTCATCCTTTGACATGATAGCAGGTTTGGGAGCTGCCAAGTGTTACACTGCTTTGGCACTTCAAGCCATGTCAAGGCATTTCTGCAGCTTGAGAGATGCCATATTGTCACAAATAAATGCTGAGAAAAGAAAACTCTTTCAGGATTTACCTAAGATCAGTAGCGGGTTGTCTCAACTAAGCTTGTTTGATAGAGACAGTAGACAGAGTAGAATGTCTCTCCAACAACTTGGGGTGATCCAAAGCCAACGCCAAGTTTGGAGACCCATCAGAGGGTTGCCTGAAACCTCTGTGGCAATTCTTCGTTCTTGGCTCTTCGAGCACTTTCTCCACCCTTATCCTAATGATTCTGAAAAGTTAATGCTGGCATCTCAGACAGGTTTAACTAAAAACCAAGTCTCAAATTGGTTCATAAATGCTCGAGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAAAGAGGAGTTTGGAGAGTCTTCTGAAGACTCCAACCCGGCTGCTAACAACTACTTGACGAGGGAAGATACCACAGACTCTGTAGAGGATTGA 1077 0.4327 MLVPSSDEYRHHQRPLNPGLINPNYFMSGQEAREACNPPVEHLTSDYFFNTGSGTFASSSAPLNRSASTSYAAESFAAVIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYAEKLFRGSRGGARTLSSELKAELRNNGPLLADRHEHQIRIARLISLLDEVEGRCEKYYHQMEEVVSSFDMIAGLGAAKCYTALALQAMSRHFCSLRDAILSQINAEKRKLFQDLPKISSGLSQLSLFDRDSRQSRMSLQQLGVIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPAANNYLTREDTTDSVED 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3914 358 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 340 - -
Ssu1g3914 358 MobiDBLite consensus disorder prediction 331 358 - -
Ssu1g3914 358 Gene3D - 256 337 - -
Ssu1g3914 358 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 11 340 - -
Ssu1g3914 358 Pfam Homeobox KN domain 279 318 IPR008422 GO:0003677|GO:0006355
Ssu1g3914 358 SUPERFAMILY Homeodomain-like 268 329 IPR009057 -
Ssu1g3914 358 Pfam Associated with HOX 79 210 IPR006563 -
Ssu1g3914 358 CDD homeodomain 262 323 IPR001356 GO:0003677
Ssu1g3914 358 SMART HOX_1 262 326 IPR001356 GO:0003677
Ssu1g3914 358 SMART prehox3 74 212 IPR006563 -
Ssu1g3914 358 ProSiteProfiles 'Homeobox' domain profile. 281 322 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3914 Ssu-Chr1 97036110 97037465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3914 64 352 Homeobox Transcription Factor Family AT2G16400 47.315 5.10e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu1g3914 POX 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3914 - - gmx:100792161 638.647