Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3909 ATGGCGTCGTCGAGTGGAAACTCCTCCACGTGCACCAAATCTCAGAGCTCTGGCTCCGAGGGTGGTTTGCAGGTTCTGATGGACGAGAGAAAGAACAAGAGAAAGCAATCGAATCGCGAATCCGCGAGAAGATCTCGGATGCGAAAGCGCAACCACTTGGATGATCTCACGAAGCAGGTGACACAGCTCACAAAGGACAACGGTGAGATCCTCGCGACCATAGACATCGCCACGCAGTACTATCTCAACGTCGAGGCAGAGAATTCCGTTCTGAGGGCCCAGACGGGCGAGCTCAGCCAACGACTCCAATCGCTGAACTACATCGTCGACGCAACCACCTACGAAAGGGATTGCTATCTAACAAGCGCACAAAATTTCACCAACACGCTCTGTCTTAACCAACCCGTATTTCAGTGGTGA 420 0.5262 MASSSGNSSTCTKSQSSGSEGGLQVLMDERKNKRKQSNRESARRSRMRKRNHLDDLTKQVTQLTKDNGEILATIDIATQYYLNVEAENSVLRAQTGELSQRLQSLNYIVDATTYERDCYLTSAQNFTNTLCLNQPVFQW 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3909 139 Gene3D - 28 111 - -
Ssu1g3909 139 Pfam bZIP transcription factor 30 74 IPR004827 GO:0003700|GO:0006355
Ssu1g3909 139 PANTHER BZIP TRANSCRIPTION FACTOR 1 136 - -
Ssu1g3909 139 SUPERFAMILY Leucine zipper domain 30 83 IPR046347 GO:0003700|GO:0006355
Ssu1g3909 139 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 33 48 IPR004827 GO:0003700|GO:0006355
Ssu1g3909 139 MobiDBLite consensus disorder prediction 1 59 - -
Ssu1g3909 139 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g3909 139 CDD bZIP_plant_GBF1 31 79 IPR045314 GO:0003700|GO:0006355
Ssu1g3909 139 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 136 - -
Ssu1g3909 139 SMART brlzneu 26 90 IPR004827 GO:0003700|GO:0006355
Ssu1g3909 139 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 28 91 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3909 Ssu-Chr1 96966631 96967050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3909 2 94 bZIP Transcription Factor Family AT1G75390 59.794 3.35e-32 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu1g3909 bZIP_1 2.4e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3909 K25786 - gmx:778188 199.519