Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3906 atgttacaaTCTATGGAAGTCCCTGATTGCATCTATCGTGGGCAACCAGTGACAATTTCCCCGagtgctcccacgccaaaacaTTCACTCTATTTGTCGAATCTGGACGACCAAAAGTTCCTAAGGTTCTCCATTAAGTACTTGTACCTTTTCAAGAAGTCCCCGAGCTTGGAAACCTTGAAGTCTTCTCTGGCCAGGGTTCTGGTGGATTATTACCCCTTGGCTGGGAGGTTGAGGAGCGTGGATGATCACAAGCTTGAGGTGGATTGCAATGGAGAAGGTGCTGTGTTTGCCGAGGCTTTCATGGACGCCACTGCTCATCAATTAATTGAATCTTCCAAGACTCCGAACAAGTCTTGGAGGAAGTTCTTGTATCGGGTGGAAGCTCACAGTTTCGTAGATGTTCCTCCTCTTGTAGTCCAGGTAACGAGTCTGGGTTGCGGGGCAATGATCCTGTGCACCGCGATCAACCACTGCCTGTGCGACGGCATCGGCACGTCCCAGTTTCTCCAGGCTTGGGCCCAACTCACCAAGAAGCCCGAATCCGATTTGACCATCACGCCCTTCCACAGGCGCCACGTGCTGAAGCCCAGAGAGCCCGCGCAGGTACAGTTCCGTCACCCGGCCTACACCGCACCCAACCCAAACCCAACCCCAACCCCAACCCCTCAAGTGGACCTCCTCAAGTTCATACAGTTACCCCCCTCGGTACCCGTGTCCTTCACCCTCACCCCCTCCCACGTGCTGAGCCTCAAGAAGCAGTGCGTGCCCTCCCTCAAGTGCACATCCTTCGAAACCGTAGCGGCGCACACGTGGCGCTCTTGGATTCGATCGCTGAACCTATCGTTACCCTCCGCGCTCGTCGTGAAGCTCCTTTTCTCGGTCAACGTTAGAGCAGTGGTTGACCTCCCGCAAGGGTATTACGGAAACGGGTTTTTACTAGCGTGCGCTGAAAGCACCGTGGATGAGTTAGTGGAGGAGGGTAACCTGCGCCACGGTGTGAAGCTTGTGCAGGAAGCCAAGGCGAGGGTGAAAAACGAGGGTTATGTAAGGTCAATGGTTGATTTGTTGGAGGACAAAACGGTAAAAACGGATCTTTCGACTAGTTTGGTTATTTCGCAGTGGTCCAAACTTGGGTTGGAAGAGGTGGATTTTGGAGAGGGGAAACCTTTGCACATGGGTCCCTTGACTAGTGATATTTACTGCTTGTTTTTACCGGTTATTGGGGACGCTAATGCGGTGAGAGTGCTCGTGTCTGTGCCCGAGAGCATGGTGGAACGTTTTCAGTATCACATGAAAGAAAGttgggaaagaaaagaagaaaacggAGATGATAACAACGGCTATCATCATCATGCCCCTCAAAATGAAAATGGATTTTTCTGA 1386 0.5014 MLQSMEVPDCIYRGQPVTISPSAPTPKHSLYLSNLDDQKFLRFSIKYLYLFKKSPSLETLKSSLARVLVDYYPLAGRLRSVDDHKLEVDCNGEGAVFAEAFMDATAHQLIESSKTPNKSWRKFLYRVEAHSFVDVPPLVVQVTSLGCGAMILCTAINHCLCDGIGTSQFLQAWAQLTKKPESDLTITPFHRRHVLKPREPAQVQFRHPAYTAPNPNPTPTPTPQVDLLKFIQLPPSVPVSFTLTPSHVLSLKKQCVPSLKCTSFETVAAHTWRSWIRSLNLSLPSALVVKLLFSVNVRAVVDLPQGYYGNGFLLACAESTVDELVEEGNLRHGVKLVQEAKARVKNEGYVRSMVDLLEDKTVKTDLSTSLVISQWSKLGLEEVDFGEGKPLHMGPLTSDIYCLFLPVIGDANAVRVLVSVPESMVERFQYHMKESWERKEENGDDNNGYHHHAPQNENGFF 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3906 461 MobiDBLite consensus disorder prediction 436 451 - -
Ssu1g3906 461 PANTHER BNAC03G58010D PROTEIN 11 440 - -
Ssu1g3906 461 Pfam Transferase family 18 433 - -
Ssu1g3906 461 Gene3D - 12 212 IPR023213 -
Ssu1g3906 461 Gene3D - 229 434 IPR023213 -
Ssu1g3906 461 MobiDBLite consensus disorder prediction 436 461 - -
Ssu1g3906 461 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 11 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3906 Ssu-Chr1 96912899 96916266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3906 19 395 Monolignol Biosynthesis Gene Families AT5G48930 29.529 2.26e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3906 - - gmx:100810619 778.474