Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3902 ATGCTTTCCCAGTTGGTAAAGGAGCATCCTTACATTTGTTGCTATGTGGGTCTGATCTTGTTGTTTTTATCATGTAAAAAAGCGTGGGCACTTTGGTGCAAAAACAAGTCCTCTGTCGGCATTCCTCCGGGAAATCGAGGCTTGCCCTTTGTAGGAGAGACACTTCAGTTCATGGCTGCCATCAACAGCAGCAAAGGTGTTCATGAATTTGTCCGAGCTCGCCGCCTCCGGTATGGAAAATGCTTCAAGACCAAGTTGTTTGGGGAAACGCACGTTTTTATTTCGAGCACGGAGTCAGCGAAAGCGATTCTAAACAACGAGGGAGGGAAATTCTCAAAGAGGTACTTAAAATCAATCGCGGAGCTGGTTGGGCCCGATAGCTTGCTCTGTGCAGCACAGCAGCATCACAAACTCATTCGCGGCTGTCTCTTCAGCTTGTTCTCAACAGATTCTTTGTCTTCCTTCGTTAAACTCTTTGATGCACTCGTTCTTGGAGCTATGAGTAGCTGGACATGTGGATCTGTTGTGGTCATACAAGATGAAACACACAAGCTGGCTTGTAAGGCGATGTGCAAGATGCTAATAAGCATCGATAGTGGCTACGAATTAATGACGATGCAAAAGGAGGTTGCTCGTTTGTGTGAAGCAATGCTAGCGTTACCCGTGAGGTTACCCTGGACCAGATTCTACAAAGGCCTTCAGGCTCGAAAAAGAATAATGGACATATTGGCGAAGCATATAAGTGAAAGAAGAAGTGGAATTGCAACTCGCCGTGTAGATTTTCTTCAACaacttttagataataaattaaacgaGGATGGAGTCCCAAGGCTAACGGACAGAGAGATCAAAGACAATATCTTAACTATGATAATTGCAGGACAGGACACCATAGCAAATGCAATGACATGGATGATCAAATTTGTGGACGAAAATCAGCAAGTTTTTAATACGCTTATGAAGGAGCAACTTGAGATTGAGAAGAATGGCACAAGAAATCCGTATCTTACCCTAGAGGCCCTTAATGAGATGCCATATGCTTCTAAGGTCGTGAAAGAAGCGTTAAGGATGGCATCCGTGGTACAGTGGTTTCCCAGAGTAGCACTCGAGGACTCTGTCATAGAAGGATTCAAAATCAAGAAAGGGTGGAACATTAACATCGATGCTAGATCGATACACCATGATCCAATTGTGCACAATGATCCGGATGCGTTCAATCCTTCAAGATTTCCTGCCGAGTCAAAGCCATACAGCTTCTTAGCTTTTGGGATGGGAGGAAGGACGTGCCTCGGGAAGAACATGGCTAAAGCCATGATGTTGGTGTTTCTCCACCGTTTCATCACCAATTGCAAGTGGAAGGTGATTGATTCTGACTCAAGTATTCAGAAATGGGCGCTTTTTACAAAACTTAGGAGTGGATATCCTGTACGTTTGATATCTACGAAGGATGACAAAAACAAAACCATGTGA 1470 0.4374 MLSQLVKEHPYICCYVGLILLFLSCKKAWALWCKNKSSVGIPPGNRGLPFVGETLQFMAAINSSKGVHEFVRARRLRYGKCFKTKLFGETHVFISSTESAKAILNNEGGKFSKRYLKSIAELVGPDSLLCAAQQHHKLIRGCLFSLFSTDSLSSFVKLFDALVLGAMSSWTCGSVVVIQDETHKLACKAMCKMLISIDSGYELMTMQKEVARLCEAMLALPVRLPWTRFYKGLQARKRIMDILAKHISERRSGIATRRVDFLQQLLDNKLNEDGVPRLTDREIKDNILTMIIAGQDTIANAMTWMIKFVDENQQVFNTLMKEQLEIEKNGTRNPYLTLEALNEMPYASKVVKEALRMASVVQWFPRVALEDSVIEGFKIKKGWNINIDARSIHHDPIVHNDPDAFNPSRFPAESKPYSFLAFGMGGRTCLGKNMAKAMMLVFLHRFITNCKWKVIDSDSSIQKWALFTKLRSGYPVRLISTKDDKNKTM 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3902 489 Pfam Cytochrome P450 42 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu1g3902 489 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Ssu1g3902 489 PRINTS P450 superfamily signature 293 310 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu1g3902 489 PRINTS P450 superfamily signature 349 360 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu1g3902 489 PRINTS P450 superfamily signature 420 429 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu1g3902 489 PRINTS P450 superfamily signature 429 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu1g3902 489 PANTHER CYTOCHROME P450, FAMILY 722, SUBFAMILY A, POLYPEPTIDE 1 11 481 - -
Ssu1g3902 489 PANTHER CYTOCHROME P450 26 11 481 - -
Ssu1g3902 489 Gene3D Cytochrome P450 32 480 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu1g3902 489 PRINTS E-class P450 group I signature 388 412 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu1g3902 489 PRINTS E-class P450 group I signature 282 299 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu1g3902 489 PRINTS E-class P450 group I signature 429 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu1g3902 489 PRINTS E-class P450 group I signature 75 94 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu1g3902 489 PRINTS E-class P450 group I signature 419 429 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu1g3902 489 SUPERFAMILY Cytochrome P450 33 479 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu1g3902 489 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 422 431 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3902 Ssu-Chr1 96835660 96841571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3902 8 452 Cytochrome P450 AT1G19630 56.696 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3902 - - lang:109327951 766.533