Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3887 ATGGCTTGGACTCGAGAAGAGAACAGACGTTTTGAGGATGCTCTTGCGGTACATGGCCCTGACGACCCCAATCGGTGGCAACATGTAGCCAACGCCGTCGGTGGAAAATCCGTACAAGAGGTGAAAATGCACTACGAGATCCTCAAGGAAGATGTCGTTCGAATAGAGCGTGATCAAATCCCAATACCCAGGTACAGAGGTGCTGGCATCAACGGAAGACAGATTGACAATGAGCAAAGGCGAATGAGGAATTTAAATCTCCAGTGA 267 0.4906 MAWTREENRRFEDALAVHGPDDPNRWQHVANAVGGKSVQEVKMHYEILKEDVVRIERDQIPIPRYRGAGINGRQIDNEQRRMRNLNLQ 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3887 88 Pfam Myb-like DNA-binding domain 1 45 IPR001005 -
Ssu1g3887 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 66 - -
Ssu1g3887 88 SMART sant 2 51 IPR001005 -
Ssu1g3887 88 ProSiteProfiles SANT domain profile. 1 53 IPR017884 -
Ssu1g3887 88 CDD SANT 2 49 IPR001005 -
Ssu1g3887 88 Gene3D - 1 51 - -
Ssu1g3887 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 66 IPR044636 GO:0003700
Ssu1g3887 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Ssu1g3887 88 SUPERFAMILY Homeodomain-like 3 56 IPR009057 -
Ssu1g3887 88 ProSiteProfiles Myb-like domain profile. 1 49 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3887 Ssu-Chr1 96674381 96675730 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu1g3887 Myb_DNA-binding 4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3887 - - gmx:100789698 159.073