Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3885 ATGTTACAAAGTATCCGCTGGATTTCCATAGACGAAGTCAAACATGGTTGTAAAGGTAACCTTACTTTAAATAACTATGCTTCCCAGACATACAGTGGTTGCAAAGCAGATGAGGTTTATTTGGTTCAGTACACGTCTGGTGCCACCGGGGTCCCAAAACCCGTGCTTGTGACAGCCGGTTCAGCTGCTCATAACGTTAGGACAGCGAGGAAAGCTTATGATCTTCATCCAAACAGCACAATCGTTTCATGGCTGCCTCAATATCATGACTGTGGCCTCATGTTTCTGTTGCTGACCGTTGTATCCGGCGCCACGTGTGTTCTCACGTCCCCAAACGCGTTCATCAAACGCCCCAGACTCTGGCTTGAACTGTTGTCCAATTTCAAAGCCACGTGCACTCCCGTTCCGTCATTCACATTGCCGCTGGTGATCAAGCGTGGAGGGATTCACGAAGGGACTTCACCCATCAACCTATCAACTTTGAAGAACCTTATAATCATCAACGAACCCATCTACAGAGACTCCGTGGAAGAATTTGTCCACACTTTTTCTCCATTTGGGTTAAGCCCTTCCTCCATCTCTCCTTCCTACGGGTTAGCAGAGAATTGTACCTTTGTATCCACTGCGTGGAGGAGCGTTAATACTGATAGTGATGCCTATTCCAGCTTCCCAGATTTTCCAACTCACAACAAACTATTGCCAGTTGCAAGGCTCGGAACCGTGGAACAGGAAGACGTGGAAATTATGGTTGTAAATGAACAAACGTTGGAGCCAGCTGAGGATGGTGTTGAAGGAGAAATTTGGGTTGCTTCCCCAAGCAATGCCTCTGGCTACCTGGGCCACCCTAGTTTAACAAGAGAGGTGTTTCATGGAAGACTAAGAAACATAGTTAGTAAATGCTTTCTTCGAACAGGGGACAGAGGCATCGTGAAAGGAGAAAGGAGATATCTCTTTGTCACAGGTCGCTGTCAAGACGTTATCCAACTCCCAAATGGTCAAAGGGTTCATCCACATTACATAGAGACTGCGGCTTATAGCAGTTGCTCGAAGTTACTCAAAGGTGGTTGCCTTGCAGCGTTTAAGGTTTCAACTACGGTGGCGGTTGTGGCAGAGATACTGAGGATCGAAAAAGACATAGACAGGGGCCTGTTGAGGAGGATTTGTGAGGGAATTAAAGAAGCTGTCTGGAAGAAAGAGAAGGTAGAGGTTGGGTGGGTGGTTTTGGTTAAGAGTGAGTGCGTTCCCAAAACCACTTCTGGAAAATTGCAAAGAGGGAAGGCTAAGGAGAAGCTTCTTGCAGGCAAAATGATGATTCTGATGGAGATGCGGTTTGGAAAAGATGTTACTGTTTTTAAGAGAGCACAAAAAAAGGGTCACGAAACTGGTTCGCTTCTATGTGCAGAAACTCGTAGCTCATTAATCTCACTTCTGTGA 1434 0.4623 MLQSIRWISIDEVKHGCKGNLTLNNYASQTYSGCKADEVYLVQYTSGATGVPKPVLVTAGSAAHNVRTARKAYDLHPNSTIVSWLPQYHDCGLMFLLLTVVSGATCVLTSPNAFIKRPRLWLELLSNFKATCTPVPSFTLPLVIKRGGIHEGTSPINLSTLKNLIIINEPIYRDSVEEFVHTFSPFGLSPSSISPSYGLAENCTFVSTAWRSVNTDSDAYSSFPDFPTHNKLLPVARLGTVEQEDVEIMVVNEQTLEPAEDGVEGEIWVASPSNASGYLGHPSLTREVFHGRLRNIVSKCFLRTGDRGIVKGERRYLFVTGRCQDVIQLPNGQRVHPHYIETAAYSSCSKLLKGGCLAAFKVSTTVAVVAEILRIEKDIDRGLLRRICEGIKEAVWKKEKVEVGWVVLVKSECVPKTTSGKLQRGKAKEKLLAGKMMILMEMRFGKDVTVFKRAQKKGHETGSLLCAETRSSLISLL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3885 477 Gene3D - 325 443 IPR045851 -
Ssu1g3885 477 PANTHER 10A19I.5 1 452 - -
Ssu1g3885 477 PANTHER DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED 1 452 - -
Ssu1g3885 477 Gene3D - 2 323 IPR042099 -
Ssu1g3885 477 SUPERFAMILY Acetyl-CoA synthetase-like 32 433 - -
Ssu1g3885 477 Pfam AMP-binding enzyme 30 329 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3885 Ssu-Chr1 96650092 96651525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3885 34 431 Monolignol Biosynthesis Gene Families AT4G19010 25.366 1.67e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3885 - - gmx:102662250 792.341