Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3883 ATGGCCTCAAGCCAGGGTTGGACAGCGAAGCAGAACAAAAGATTTGAGAATGCCCTTGCCATCTTCGACAAGGACACCCCAGATAGGTGGCAGAACCTGGCGAGGGCCGTTGGAGGAAAGACAGTGGAGGAAGTGAAAAGGCATTACGAGAAGCTCGTTGAAGATGTGAAGCAGATAGAGGAAGGTCATGTGCCTCTGCCCAATTACCGAAATGTTGCAACAATGGGAAGCAGCATCAGAGGTTATAGCTACATGGATGAAGAAAACAGGATGAAGGCTCTGAGTCTGCAGTGA 294 0.4966 MASSQGWTAKQNKRFENALAIFDKDTPDRWQNLARAVGGKTVEEVKRHYEKLVEDVKQIEEGHVPLPNYRNVATMGSSIRGYSYMDEENRMKALSLQ 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3883 97 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 97 IPR044636 GO:0003700
Ssu1g3883 97 CDD SANT 7 53 IPR001005 -
Ssu1g3883 97 SMART sant 3 55 IPR001005 -
Ssu1g3883 97 SUPERFAMILY Homeodomain-like 6 60 IPR009057 -
Ssu1g3883 97 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 97 - -
Ssu1g3883 97 Coils Coil 42 62 - -
Ssu1g3883 97 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Ssu1g3883 97 Gene3D - 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3883 Ssu-Chr1 96635169 96635772 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu1g3883 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3883 - - vra:106761704 179.489