Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3871 ATGGCGAAACGCTACAAGCTgaaattcaacctcccttcatTCCAAATGTGTCGCTCAAAAAACCTTTCCTCCTTCCCAGGAAACCCAGTTCCCGCCATATACCGTCTGTCTCCCGTGAACCCCAACGCACGTGACACAAGGCATCCAAACCTGCCTTCTCCGTCACCGTCAAAGACAACTTCCATCGCACAGGGATGCAAAATGTGCCGTGACAAGGAGAACTCGAAGAAGGCGAAATCCAGAGGCCGAAAAAGCACGTCGAGCGTTCCGTCAAGGCGTAGCGATTTTCTAAAAGATAACATCGAGGAAGAGGAAAGCGAGACTCTGATTTCTCGCTTGACAAGTTCCTCCGACGAGGAGAAAGATCTCAGTGGTAACAGGCAGAGCAGCGTGAAGAAGGTTCGGAGCGTGAGGTTTCGGAGTTCGGACAAACGAAGAGGATCGGAGGTGAAGAAGACGTCGACGGCGGCGACGCGGAACAGCGTGGAGGGGAAGGTGAAGGAGAGCTTCGCGGTGGTGAAGAAGTCGAAGGATCCTTACGAAGACTTCAAGAAATCGATGATGGAGATGATAACGGAGATGGAGATGTCTGAGGCCGAAGACTTGGAGCAGCTTCTACAGTGTTTCCTGGCTTTGAACTCGCGGAGTTATCATGCAGTCATTGTGCGAGCTTTCTTGGAGATTTGGCAACAAATGTTCGTTTCGAACCCTACGTCGatgaaaaatctcaaaaaaaggGACGTTAAAACTGGTTTCGAGAAGTAA 765 0.4837 MAKRYKLKFNLPSFQMCRSKNLSSFPGNPVPAIYRLSPVNPNARDTRHPNLPSPSPSKTTSIAQGCKMCRDKENSKKAKSRGRKSTSSVPSRRSDFLKDNIEEEESETLISRLTSSSDEEKDLSGNRQSSVKKVRSVRFRSSDKRRGSEVKKTSTAATRNSVEGKVKESFAVVKKSKDPYEDFKKSMMEMITEMEMSEAEDLEQLLQCFLALNSRSYHAVIVRAFLEIWQQMFVSNPTSMKNLKKRDVKTGFEK 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3871 254 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 1 59 IPR038933 GO:0045892
Ssu1g3871 254 PANTHER TRANSCRIPTION REPRESSOR OFP7 1 59 - -
Ssu1g3871 254 PANTHER TRANSCRIPTION REPRESSOR OFP7 44 241 - -
Ssu1g3871 254 Pfam Transcriptional repressor, ovate 176 233 IPR006458 -
Ssu1g3871 254 MobiDBLite consensus disorder prediction 43 64 - -
Ssu1g3871 254 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 170 232 IPR006458 -
Ssu1g3871 254 MobiDBLite consensus disorder prediction 95 128 - -
Ssu1g3871 254 MobiDBLite consensus disorder prediction 36 161 - -
Ssu1g3871 254 ProSiteProfiles OVATE domain profile. 172 231 IPR006458 -
Ssu1g3871 254 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 44 241 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3871 Ssu-Chr1 96464138 96464902 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Ssu1g3871 Ovate 2.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3871 - - gmx:102662518 375.17