Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3866 ATGACGGAACCTCAGAATCCTTCCCCATTGATACATTCATCCGCTTTAGAAAGCGTGCCTCAACCACTGCCAGTGCCACCTCCCAAAAAGAAGCGAAGCCTCCCTGGCATGCCAgatccAGATGCTGAAGTGATTGCTTTGTCACCGAAGGCTCTCTTGGCGACGAACCGTTTCGTGTGCGAGATCTGCAACAAGGGGTTCCAGCGCGACCAGAACCTGCAGCTTCACCGGCGCGGCCACAACTTACCGTGGAAGCTGCGGCGGCGAGGGAGCAAGGAACCGCGCAAGAAAGCGTACGTGTGTCCCGAGCCTACCTGCATCCACCACAACCCTGCCAGGGCGCTCGGCGACCTCACCGGCATCAAGAAGCACTTCTGCAGAAAACACGGCGAGAAAAAGTGGAAATGCGAACGCTGCTCTAAGAAATACGCTGTTCGCTCCGATTGGAAGGCACATATGAAGACTTGCGGCACCAGAGAGTACCGATGCGACTGCGGCACCTTGTTCTCTAGGAGGGATACTTTCATCACGCACAGAGCATTTTGCGAAGTGTTAGCGCAAGAGAGCGCCAAGGCCCAGGCCCAGGCCCAAGGTGTTAGCAACGTTGTCGGGGCTTCTTCGCCGCCTACGCCTCCACTTACTCCCTCTGCTTCTGTGGTGTCTCCAACTTTGTCCAATCAGAGCTCAGAAATTCCGGAAAACCCAACGAAGCTGTCACCGCCATCTTCAAACGCAACGTGTTTCGTGAACGCCGTGACAAGCAGCACCCCTTCCAGTTCCACTACTTCCACCACTGTTTTTGCAAGTGTATTGGCATCGTCCACAACTCCTTcacaatcaccatcaacttCCTCATTCTCCAACCTCATGTCAAGCTTGGCTCGCTCGGATTGCCCCAATGCCACATCCCTCTCCCTCTCCACACCACTCTATCTTTCCAGCCATGACCCTCCCCACTACACTGCATCTCCCCAACCCGCATTATCTGCCACTGCACTACTCCAAAAGGCAGCTCAAATGGGTGCACGTGCGTCCAATGCGTCCTTGCTTCGTGGCTTAGGCTTAGCAACAACATTATCATCCTTCGGGAAAGACGACGGTGTTAGAATTAGTGCCACAACAACAATACAATGGAACGGCCAAGTGAAGCAAGAGAATCACCCGGTGGTGGATAACCTTGGGCTTGGGCTTCCCTGTGGGGGTGTCAGCGATGTGATGATGGGCCCTTCTACCCCATTCGGGGGCCAGCCCATGACCCGTGACCTTCTTGGTCTGAGCATCGGTGGCGAAGCAAGCAGGGGTGGTCTCTCTGCTTTGTTTACCTCATTTGGAGGGAACTTTGATTCATCCGGTGACGGAGGAGTTCACCGGTAG 1374 0.54 MTEPQNPSPLIHSSALESVPQPLPVPPPKKKRSLPGMPDPDAEVIALSPKALLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRRRGSKEPRKKAYVCPEPTCIHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVRSDWKAHMKTCGTREYRCDCGTLFSRRDTFITHRAFCEVLAQESAKAQAQAQGVSNVVGASSPPTPPLTPSASVVSPTLSNQSSEIPENPTKLSPPSSNATCFVNAVTSSTPSSSTTSTTVFASVLASSTTPSQSPSTSSFSNLMSSLARSDCPNATSLSLSTPLYLSSHDPPHYTASPQPALSATALLQKAAQMGARASNASLLRGLGLATTLSSFGKDDGVRISATTTIQWNGQVKQENHPVVDNLGLGLPCGGVSDVMMGPSTPFGGQPMTRDLLGLSIGGEASRGGLSALFTSFGGNFDSSGDGGVHR 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3866 457 MobiDBLite consensus disorder prediction 1 40 - -
Ssu1g3866 457 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Ssu1g3866 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Ssu1g3866 457 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
Ssu1g3866 457 MobiDBLite consensus disorder prediction 1 15 - -
Ssu1g3866 457 Pfam Zinc-finger of C2H2 type 58 80 - -
Ssu1g3866 457 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 450 - -
Ssu1g3866 457 SMART c2h2final6 134 154 IPR013087 -
Ssu1g3866 457 SMART c2h2final6 99 129 IPR013087 -
Ssu1g3866 457 SMART c2h2final6 58 80 IPR013087 -
Ssu1g3866 457 Gene3D Classic Zinc Finger 113 193 - -
Ssu1g3866 457 MobiDBLite consensus disorder prediction 217 242 - -
Ssu1g3866 457 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 25 450 - -
Ssu1g3866 457 Gene3D Classic Zinc Finger 54 81 - -
Ssu1g3866 457 MobiDBLite consensus disorder prediction 201 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3866 Ssu-Chr1 96374560 96377525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3866 29 442 IDZ Gene Family AT5G66730 50.000 3.92e-132 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu1g3866 zf-met 0.0032 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3866 K25869 - gmx:100818095 675.241