Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3860 ATGACTTCGGACGGAGCAACGTCGGCGGCGACGAATCGGAGGAAGCCGTCgtggagggagagagagaacaaCCGGAGGAGAGAGAGGCGAAGGAGAGCCATAGCGGCGAAGATATACTCTGGACTTAGGGCGCAGGGGAACTACAATTTGCCCAAACACTGCGACAACAACGAGGTCTTGAAGGCTCTCTGCGCCGAAGCTGGTTGGACCGTCGAAGAAGACGGCACCACCTATCGCAAGGGATGCAGGGCACCGCTGCCAGGTGACGGTGTAGGCACCTCCACCAGAAACACCCCTTTCTCGTCACAAAATCCGAGTCCTCTTTCGTCGTCATTCCCGAGTCCAATTCCTTCCTACCAAGTGAGTCCTTCCTCGTCCTCTTTCCCGAGCCCTTCTCGTTTCGATGCGAACAACGCGTCAAACCTCATTCCGTATATTCGGAATGCGTTTCCCGCGACTCTCCCTCCTTTAAGGATATCAAACAGCGCCCCTGTGACCCCACCTCTGTCCTCGCCAACTTCGAGAAACCCCAAACCGATTCCCACATGGGACTCGATTGCCAAAGCCTCCATGGCGTCATCCTTCAACCACAACCACCCTTTCTTCGCGGCTTCTGCCCCGGCCAGCCCCACACACCGCCACCTGTATGCCCCGCCAACTATTCCCGAATGTGATGAGTCTGATACCTCCACTGTTGAGTCTGGCCAGTGGCTGAACTTCCAAGCATTTGCACCTTCTGCTTCTGCTGTGCCCATCTCTCCCACCTTGAACTTTATCAAACCTGTTGTGAGTCAGCAGCACAACGTGCCTGGTAACAGAATCCAAGAGATGAGAAACTCGGAGGCGGAATTTGGGGTGCAGGTGAAGCCTTGGGTTGGGGAGAGGATTCATGAAGTGGGATTGGATGATTTGGAGCTCACACTTGGAAGTGGGAAGGCGCCTGCTTAG 948 0.5422 MTSDGATSAATNRRKPSWRERENNRRRERRRRAIAAKIYSGLRAQGNYNLPKHCDNNEVLKALCAEAGWTVEEDGTTYRKGCRAPLPGDGVGTSTRNTPFSSQNPSPLSSSFPSPIPSYQVSPSSSSFPSPSRFDANNASNLIPYIRNAFPATLPPLRISNSAPVTPPLSSPTSRNPKPIPTWDSIAKASMASSFNHNHPFFAASAPASPTHRHLYAPPTIPECDESDTSTVESGQWLNFQAFAPSASAVPISPTLNFIKPVVSQQHNVPGNRIQEMRNSEAEFGVQVKPWVGERIHEVGLDDLELTLGSGKAPA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3860 315 MobiDBLite consensus disorder prediction 14 29 - -
Ssu1g3860 315 MobiDBLite consensus disorder prediction 91 132 - -
Ssu1g3860 315 MobiDBLite consensus disorder prediction 1 31 - -
Ssu1g3860 315 MobiDBLite consensus disorder prediction 78 132 - -
Ssu1g3860 315 Pfam BES1/BZR1 plant transcription factor, N-terminal 12 139 IPR008540 -
Ssu1g3860 315 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 313 IPR033264 GO:0003700|GO:0006351|GO:0009742
Ssu1g3860 315 PANTHER PROTEIN BRASSINAZOLE-RESISTANT 1 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3860 Ssu-Chr1 96312840 96314582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3860 1 313 BZR Transcription Factor Family AT1G75080 67.262 5.38e-125 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Ssu1g3860 BES1_N 9.4e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3860 K14503 - gmx:100803869 509.605