Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3853 aTGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCGCCCCCAAGCCCTTCCTCCgtcaacaacaataacaacaatgatgCTGGCAATTTTGAATGCAACATTTGCTTCGAATTAGCGCAAGATCCAATAATTACTTTGTGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTTACTTTCACTCACAGTCCCGAGAATGCCCAGTGTGCAAGGCCCTGGTGGAGGAGGAGAAGCTGGTTCCCTTGTATGGGAGAGGAAAGACGTCAACTGATCCGAGATCAAAGTCTATTCCAGGCGTTAATATTCCGCATCGTCCTGCTGGTCAGAGGCCTGAAACTGCTCCTCCACCTGAAACAAATCATTTTCATCAACATGGGTTTGGATTTATGGGTGGCTTGGGAGGATTTGCGCCACCGCCAGTGCCAACCACAAGATTTGGGAATTTCGCATTGTCTGCAGCATTTGGTGGTTTTATACCGTCCTTGTTCAACTTTCAGTTGCATGGGTTTCATGATGGGGCCATGTATGGAGGAGCAGCTGGTTTTCCTCATggattttctaattcatttcaTGGTATCCATGCTCATGGATATCCTCTGCGCACCCATCAAGGGCAACAAGATTATTATCTGAAGAAGCTGATTGTATTTGTTGTTTTCTGTGTTCTTCTGGCTTTGATTTGGCGATAG 696 0.4411 MASGFGESTSRSPPSPSSVNNNNNNDAGNFECNICFELAQDPIITLCGHLFCWPCLYKWLYFHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPETNHFHQHGFGFMGGLGGFAPPPVPTTRFGNFALSAAFGGFIPSLFNFQLHGFHDGAMYGGAAGFPHGFSNSFHGIHAHGYPLRTHQGQQDYYLKKLIVFVVFCVLLALIWR 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3853 231 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Ssu1g3853 231 SMART ring_2 32 72 IPR001841 -
Ssu1g3853 231 SUPERFAMILY RING/U-box 29 85 - -
Ssu1g3853 231 CDD RING-HC_AtRMA_like 30 74 - -
Ssu1g3853 231 MobiDBLite consensus disorder prediction 87 117 - -
Ssu1g3853 231 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Ssu1g3853 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Ssu1g3853 231 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g3853 231 PANTHER OS12G0636000 PROTEIN 2 230 - -
Ssu1g3853 231 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Ssu1g3853 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3853 Ssu-Chr1 96094773 96095468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3853 14 214 C3H Transcription Factor Family AT1G19310 67.476 1.79e-85 251