Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3844 ATGATCACTAAACAAAAACACCCACTTCTGCTGTCCCTCATAGTTTCAGGCGTATTAATATTTCTCATTCCAACAACCAATGCCCAAGTGAACTACCGCGAGTGCCGCCAAACATGCGGTTCCTCGAAACCCTTCCCTTACCCTTTCGGATTCTCCTCCGGCTGCGCAATCCGCCTGAACTGCTCCGACGGGGGCGCCGCCGTTGGAGAATTCCCGGTCCAATCGGTAACCACAGACAGCATAATCGTGCACATCGAGGCCCAATGCAATCGCCCGTTCGATAACTTCCACCAACTGTTCAGCCACAAATACGCGCCCACTTCGCGAAACGTGATCCTCTTTGGGAACTGCACCGATACGCGCTTAACCTGCTCCATACCGGAGATTCTGGTGCGGACGCACTTCGAATCCGCGGGTTGCAATGCCTCCGGCACCGACAATTTGAGCTGCTACTTCGAGAACAGAACCGACGGCTTCGTGAATCGCCCAGGATTGGAACAAATCGGGTGCGAGTACTTTATGTCGTCGCTTTCATCGCCAGATTCTAAAAACGTTTCGGACGCGCCTGTGTCTTTGGAGGTAAATATAATCGAACTTGGATGGTGGCTTCAGGGAGATCGATGTCTATGTTCTGATCATGCCAATTGTACCAAAATTGAGTCGTCGCCGGTTGACGGAAAGCCAGGTTTCCGGTGTTGCTGCCTCGACGGGTTTGTCGGCGATGGGTTTTTGGCCGGAACAGGTTGCCGGAAAGCCTCGTCATGCAACCCAGCGAAGTACATGTCTGGCCGATGTGGAGGAACAGCGAGATTCATTGTCTTAATTGGAGGGTTTGTTATTGGAGCTTCGCTGATGGTTACTCTGGGTTCACTATGTTGCTTCTTCCGCCGGCGCTCCAAATTGAGAGTCACAGAGAGCACAAAAAGGCGCTTAACCGAAGCCACAGGCAACAATAGCGTTCCTATCTTTCCCTACAAAGACATTGAGAAAGCCACGAATAGTTTCTCAGAGAAGCAACGACTGGGAACTGGGGCATACGGCACGGTGTATGCTGGAAAACTCTACAACGACGAATGGGTTGCCATCAAAAGGATAAAACACAGAGACACTGACAGTGTTGAGCAAGTGATGAACGAGATCAGGCTCCTTTCCTCAGTGAGCCACACCAATTTAGTTCGCCTTTTGGGTTGCTCCATTGAATACGGAGAACAAATCCTTGTGTACGAGTTCATGCCCAATGGAACACTAAGTCAGCATTTGCAAAAGGAGAGAGGAAATGGTCTTCCATGGCAAGTTCGACTCACCATTGCCACTGAAACAGCACAAGCCATAGCACATCTTCATTCAGCCATTAGTCCCCCCATTTACCACAGAGACATCAAGTCCAGCAACATACTTTTAGACCACAATTTCAGGTCCAAGGTGGCAGATTTTGGTCTCTCTAGAATTGGGATGACCGAAATATCCCACATTTCAACTGCCCCACAGGGAACCCCTGGCTACGTTGATCCACAGTACCATCAAGACTTTCACCTCTCTGACAAGAGTGATGTGTATAGCTTCGGTGTTGTTCTTGTTGAGATCATAACGGGGTTGAAAGTGGTGGACTTTTCACGTCCGCATAATGAAGTGAATTTGGCTTCTCTTGCTGCGGACAGGATCGGGAAAGGGCTTTTGGATGAGATTATAGACCCATTCCTTGAACCTGAAGGAGGTAGTGATGCTTGGACCCTCTCCTCCATACACAAGGTGGCTGAGTTGGCATTTAGATGCCTTGCGTTCCATAGGGACATGAGACCTTCGATGACAGAAGTGGCTTCTGAGTTGGAGCAGCTTAGGTTGAGTCAGTGGACAACATTGGGAGACAACAATTGTGCAACTTCAACGGAGTTGTCCTCTTGCTCTTCCTCCTCCAATGAAAGTGAGAAACCTCTAAGTATCGCAATGAGGAAGGTTGGGGAAAAGGGTAAAGGCTATCTCAAGCTCCAAACTGGGCCCGTTACTTTAAAGTCATTACAAAGGCTAAATAGTGACTCACCGGTCTCGGTGCAAGACCATGACTTGTGGTTGAGTGAGCAGAGCTCTGTTTCGTCAAGTAGTTTTCCAAGCAAGTCATTTGATTGA 2124 0.4906 MITKQKHPLLLSLIVSGVLIFLIPTTNAQVNYRECRQTCGSSKPFPYPFGFSSGCAIRLNCSDGGAAVGEFPVQSVTTDSIIVHIEAQCNRPFDNFHQLFSHKYAPTSRNVILFGNCTDTRLTCSIPEILVRTHFESAGCNASGTDNLSCYFENRTDGFVNRPGLEQIGCEYFMSSLSSPDSKNVSDAPVSLEVNIIELGWWLQGDRCLCSDHANCTKIESSPVDGKPGFRCCCLDGFVGDGFLAGTGCRKASSCNPAKYMSGRCGGTARFIVLIGGFVIGASLMVTLGSLCCFFRRRSKLRVTESTKRRLTEATGNNSVPIFPYKDIEKATNSFSEKQRLGTGAYGTVYAGKLYNDEWVAIKRIKHRDTDSVEQVMNEIRLLSSVSHTNLVRLLGCSIEYGEQILVYEFMPNGTLSQHLQKERGNGLPWQVRLTIATETAQAIAHLHSAISPPIYHRDIKSSNILLDHNFRSKVADFGLSRIGMTEISHISTAPQGTPGYVDPQYHQDFHLSDKSDVYSFGVVLVEIITGLKVVDFSRPHNEVNLASLAADRIGKGLLDEIIDPFLEPEGGSDAWTLSSIHKVAELAFRCLAFHRDMRPSMTEVASELEQLRLSQWTTLGDNNCATSTELSSCSSSSNESEKPLSIAMRKVGEKGKGYLKLQTGPVTLKSLQRLNSDSPVSVQDHDLWLSEQSSVSSSSFPSKSFD 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3844 707 Gene3D Phosphorylase Kinase; domain 1 296 410 - -
Ssu1g3844 707 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 655 IPR045274 GO:0007166
Ssu1g3844 707 Pfam Protein kinase domain 335 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3844 707 ProSiteProfiles Protein kinase domain profile. 335 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3844 707 CDD STKc_IRAK 341 612 - -
Ssu1g3844 707 Gene3D Transferase(Phosphotransferase) domain 1 411 630 - -
Ssu1g3844 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Ssu1g3844 707 SUPERFAMILY Protein kinase-like (PK-like) 313 610 IPR011009 -
Ssu1g3844 707 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 27 655 - -
Ssu1g3844 707 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Ssu1g3844 707 SMART serkin_6 335 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3844 Ssu-Chr1 95913121 95921109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3844 1 701 Receptor kinase-like Gene Family AT2G23450 52.595 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Ssu1g3844 Pkinase 7.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3844 - - gmx:100777480 1179.08