Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3823 ATGCAATCGTCTAACGGCTCCGATTCGCAAGCGACGGAGCAGAATCAACAGGCGCCGGCGGCGCAGGCAGTGGCGGTGCCGCCGCAGTGGATGCCGATGCAGTACCCGGCGGCGGCGATGGTAATGCAGCACCACATGATACCGCCTCAACACTACGCGCCGCCGCCGCCGCAGCCCTACATGGCTTACCACCAATACCAGCAGCAGGTGGCGCACGTGCCGCCGCACGGGCACCACCAGGGATCCAGCGCCGAGAACAAGACCATATGGGTCGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCTCATGGCACAGCAGAGAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTCCGCCTGAACTGGGCAACATTTAGCACCGGAGACAAGCGTTCAGATAATGTTCCCgatctttctatttttgtagGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAAACGACTGGCTATCAACAAGGAAGTCAGTCAAATGGCACATCCAGCCAATCTGAAGCTGATTCTACAAACACGACTatttttgttgGAGGACTTGACCCTAATGTTACAGCTGAAGATCTTAGGCTGCCATTCTCCCAGTATGGTGAGATAGTCTCCGTTAAGATACCTGTTGGAAAAGGATGTGGGTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAAGCGTTGCAGAAGCTAAATGGGACAACGATTGGCAAGCAAATGGTTCGTCTTTCATGGGGCCGAAATCCAGCAAATAAGCAGTTTAGAGCAGATTTCGGCAATCCCTGGAGTGGGGCGTATTATGGGGGGCCTGTTTATGATGGTTATGGATATGCTTTGCCACCTCCTCATGACCCGAGCATATATGCTGCTGCTTATGGGGCTTACCCCGTTTATGGAGGACACCAACAACAACACTGCGCTATAAACCCTAACACTCGTGTTGTTCCTCTGCCATTGCTGAGTGCACGTGGAGTGGTGCCTCTTCTGCTAGTGCATGGGGCGCCTTCTCTGCCATTGCTTCTGACCGGTACAACACCCAACAGTCACAGATCAAGCAATCCACCACTCACCAGAGGCCCCCGCACTGCAACACTAAGCCTTTGCTGCCCATTTTCTTTTGCTCAGGAGATAGcagaaaaaatgttgaaaaccGCCAAAAGCAAGTAA 1494 0.4833 MQSSNGSDSQATEQNQQAPAAQAVAVPPQWMPMQYPAAAMVMQHHMIPPQHYAPPPPQPYMAYHQYQQQVAHVPPHGHHQGSSAENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTTGYQQGSQSNGTSSQSEADSTNTTIFVGGLDPNVTAEDLRLPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRADFGNPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPVYGGHQQQHCAINPNTRVVPLPLLSARGVVPLLLVHGAPSLPLLLTGTTPNSHRSSNPPLTRGPRTATLSLCCPFSFAQEIAEKMLKTAKSK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3823 497 CDD RRM2_SECp43_like 179 258 - -
Ssu1g3823 497 SMART rrm1_1 286 353 IPR000504 GO:0003723
Ssu1g3823 497 SMART rrm1_1 88 163 IPR000504 GO:0003723
Ssu1g3823 497 SMART rrm1_1 181 255 IPR000504 GO:0003723
Ssu1g3823 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 156 IPR000504 GO:0003723
Ssu1g3823 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 251 IPR000504 GO:0003723
Ssu1g3823 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 348 IPR000504 GO:0003723
Ssu1g3823 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 259 IPR000504 GO:0003723
Ssu1g3823 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 357 IPR000504 GO:0003723
Ssu1g3823 497 CDD RRM1_SECp43_like 88 168 - -
Ssu1g3823 497 Gene3D - 179 255 IPR012677 -
Ssu1g3823 497 SUPERFAMILY RNA-binding domain, RBD 179 359 IPR035979 GO:0003676
Ssu1g3823 497 Gene3D - 86 166 IPR012677 -
Ssu1g3823 497 MobiDBLite consensus disorder prediction 1 23 - -
Ssu1g3823 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 167 IPR000504 GO:0003723
Ssu1g3823 497 Gene3D - 262 364 IPR012677 -
Ssu1g3823 497 MobiDBLite consensus disorder prediction 260 281 - -
Ssu1g3823 497 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g3823 497 CDD RRM3_NGR1_NAM8_like 284 355 - -
Ssu1g3823 497 SUPERFAMILY RNA-binding domain, RBD 55 169 IPR035979 GO:0003676
Ssu1g3823 497 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 23 413 - -
Ssu1g3823 497 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 23 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3823 Ssu-Chr1 95327478 95343202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3823 89 364 Eukaryotic Initiation Factors Gene Family AT4G34110 28.622 2.83e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3823 - - gmx:100785454 722.235