Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3816 ATGTTGCATGAAACTTTTTCTAATAGATACCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAAACGACTGGCTATCAACAAGGTACGCCAAATCATATGACTTGCTTTTGA 249 0.4096 MLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTTGYQQGTPNHMTCF 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3816 82 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 65 IPR000504 GO:0003723
Ssu1g3816 82 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 75 - -
Ssu1g3816 82 SUPERFAMILY RNA-binding domain, RBD 2 75 IPR035979 GO:0003676
Ssu1g3816 82 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 57 IPR000504 GO:0003723
Ssu1g3816 82 Gene3D - 1 79 IPR012677 -
Ssu1g3816 82 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 1 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3816 Ssu-Chr1 95235487 95235735 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3816 2 76 Eukaryotic Initiation Factors Gene Family AT1G22760 34.667 7.40e-08 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3816 - - gmx:100785454 154.066