Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3813 ATGCCGATGCAGTACCCGGCGGCGGCGATGGTAATGCAGCACCACATGATACCGCCTCAACACTACGCGCCGCCGCCGCCGCAGCCCTACATGGCTTACCACCAATACCAGCAGCAGGTGGCGCACGTGCCGCCGCACGGGCACCACCAGGGATCCAGCGCCGAGAACAAGACCATATGGGTCGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCTCATGGCACAGCAGAGAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTCCGCCTGAACTGGGCAACATTTAGCACCGGAGACAAGCGTTCAGATAATGTTCCCGATCTTTCTATTTTGTAG 462 0.526 MPMQYPAAAMVMQHHMIPPQHYAPPPPQPYMAYHQYQQQVAHVPPHGHHQGSSAENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIL 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3813 153 Gene3D - 56 136 IPR012677 -
Ssu1g3813 153 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 152 - -
Ssu1g3813 153 SMART rrm1_1 58 133 IPR000504 GO:0003723
Ssu1g3813 153 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 137 IPR000504 GO:0003723
Ssu1g3813 153 CDD RRM1_SECp43_like 58 138 - -
Ssu1g3813 153 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 1 152 - -
Ssu1g3813 153 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 126 IPR000504 GO:0003723
Ssu1g3813 153 SUPERFAMILY RNA-binding domain, RBD 25 140 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3813 Ssu-Chr1 95190420 95192108 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3813 59 142 Eukaryotic Initiation Factors Gene Family AT4G34110 32.184 3.90e-08 49.7