Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3806 ATGGTGGCAGCATACGAGGAGAGTCGGCGCAAGCGATTGGAGGAGAACAGGAAGAGGATGGAGGCCCTCAATCTCCCCCTCCTTTCTCAAGCTCTTCAAAAATCCCCTTCTCCCAAATCCTCCCCGCTGAAGCAGGTAAAGAGTCGCACCATTGAGAAAGAGGTGGTTGTGGTGAGAAGGTCCAGCCGTGTGGCCAACTTGCCTACTCCTGTTTACAAAGAGGTGGTCGTTGATCGCGTGACAATACCTAGAAGTGTTTGTAGGACTTACAATAAGCACAGGGATTATGCGAATCGGGTGTATGCGTCAGATGAAGCCAGAGAGGAAGCATTGGAGAAAGCAGAAAAGTTAATGTCGGGTTTAGAATCTGAATATCCAACCTTCATAAAGTCAATGCTCCAGTCCCACATCAGCGGGGGATTCTGGCTcGGCCTTCCGGTCCACTTCTGCAAGAGCAATCTTCCAAAAAGGGACGAAGTGATGACTTTGATTGATGAGGATGGGAATGAGTATCCAACAATATATTTGCCACGAAAAACAGGACTTAGTGGTGGATGGAAAGGTTTTGCGGTTGCTCATGACCTAGCTGATGGGGAcgctttaatttttcaattaatcaaGCGCAGCGCATTCAAGgTGTACATTGTTAGAGCCAATAGTCCTCCAGAGGATATACAGCTTAAGTGA 687 0.4658 MVAAYEESRRKRLEENRKRMEALNLPLLSQALQKSPSPKSSPLKQVKSRTIEKEVVVVRRSSRVANLPTPVYKEVVVDRVTIPRSVCRTYNKHRDYANRVYASDEAREEALEKAEKLMSGLESEYPTFIKSMLQSHISGGFWLGLPVHFCKSNLPKRDEVMTLIDEDGNEYPTIYLPRKTGLSGGWKGFAVAHDLADGDALIFQLIKRSAFKVYIVRANSPPEDIQLK 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3806 228 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 220 IPR044837 -
Ssu1g3806 228 SMART B3_2 128 219 IPR003340 GO:0003677
Ssu1g3806 228 SUPERFAMILY DNA-binding pseudobarrel domain 122 219 IPR015300 -
Ssu1g3806 228 Coils Coil 3 23 - -
Ssu1g3806 228 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Ssu1g3806 228 Pfam B3 DNA binding domain 128 218 IPR003340 GO:0003677
Ssu1g3806 228 PANTHER B3 DOMAIN-CONTAINING PROTEIN 4 220 - -
Ssu1g3806 228 CDD B3_DNA 126 217 IPR003340 GO:0003677
Ssu1g3806 228 Gene3D - 102 220 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3806 Ssu-Chr1 95096351 95098691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3806 49 223 B3 DNA Binding Superfamily AT5G42700 61.932 6.79e-68 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu1g3806 B3 7.5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3806 - - gmx:100797091 368.237