Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3798 ATGGCCGTAGCAATAGGAAGAAGCTTCCCCATACAGCCCTGCTCTTTATTCAACAGTAAGAGCTTAGATAGACCTTCACCGGGAGGAAGAGTCTCGTGGATTGGGCATGCTGCTGCAGTCACTCCACGTTATAGGCAAACTTGTGTAGCAGCGCAACAGCGACCTACATGGCTCCCAGGACTTGATCCCCCATCTCATCTTGATGGAACTCTGGCTGGAGATTTTGGGTTTGACCCACTTGGGCTCGCAGAGGATCCGGAAAGCTTAAGGTGGTATGTGCAGGCAGAGCTGGTTCATTCGCGCTTTGCAATGCTTGGGGTCTTGGGAATTCTAGTGACAGATCTACTTCGCGTTACAGGAATTAGTAAGATACCCGTTTGGTTTGAAGCTGGTGCGGTAAAATACGAGCTTGCCAATACAGAGACACTCTTCATTGTTCAACTATTTCTGATGGGGTTTGCCGAAACAAAAAGGTACATGGATTTTGTAAGTCCTGGATCTCAAGCTAAAGAGGGGTCCTTCTTTGGATTGGAAGCTTCACTGGAAGGCCTAGAGCCAGGGTACCCTGGGGGTCCTCTGCTAAATCCTCTTGGCCTAGCTAAAGACATTAAAAACGCTCATGACTGGAAGCTTAAAGAGATTAAGAATGGGCGACTTGCAATGGTGGCAATGCTTGGCATCTTTGTACAAGCTTCAGTGACCCATGTTGGACCAATTGATAACCTTGTGGAGCATCTTTCCAATCCATGGCATAAAACTATTATTCAGACCCTTGCGAGTTCTAGTTCTTAG 792 0.4735 MAVAIGRSFPIQPCSLFNSKSLDRPSPGGRVSWIGHAAAVTPRYRQTCVAAQQRPTWLPGLDPPSHLDGTLAGDFGFDPLGLAEDPESLRWYVQAELVHSRFAMLGVLGILVTDLLRVTGISKIPVWFEAGAVKYELANTETLFIVQLFLMGFAETKRYMDFVSPGSQAKEGSFFGLEASLEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTLASSSS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3798 263 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC 1 260 - -
Ssu1g3798 263 SUPERFAMILY Chlorophyll a-b binding protein 49 260 - -
Ssu1g3798 263 Pfam Chlorophyll A-B binding protein 63 231 IPR022796 -
Ssu1g3798 263 Gene3D Chlorophyll a/b binding protein domain 55 263 - -
Ssu1g3798 263 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 260 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3798 Ssu-Chr1 95020129 95021509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3798 46 258 Chloroplast and Mitochondria Gene Families AT3G61470 46.262 9.03e-61 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3798 K08911 - gmx:100804934 464.151