Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3790 ATGAATTTCAAGAGCTTCGGGAATGAGGCGGGCGGCGGCGACGGCGGCGGAGGGAGGTCGGCGGGAAACTTCTCCCTGGCGCGGCAGCCGTCGGTGTACTCGCTGACGTTCGACGAGTTCGTGAGCAGCATGGGAAGTTCGGGGAAGGACTTTGGCTCCATGAACATGGACGAGCTGCTGAAGAACATTTGGAGCGCGGAGGAGGTTCAGACAATGGCGTCGGCGGGCGTCGGCGCCATGGACGGCGGCCCCGGCATCAGCCATTTGCAGCGGCAGGGGTCGCTGACGCTGCCGCGGACCCTCAGCCAGAAGACCGTGGATGAGGTTTGGAAGGACATCTCGAAGGACCACGGTGGGCCCAATTTGGCCCAAACGCAGAGACAGCCAACGCTGGGAGAGATGACGTTGGAGGAGTTTTTGGTCAGAGCCGGTGTGGTTAGAGAAGACGCGAAGCCGAACGACGACGTTTTGTTGGATCTGGCTCGTGCCGGGATTAACAGTGGTTTGGGGTTGGGGTTTCAGCAGATGAACAAGGTTGCTGCTGCAACCGGTTTGATGGGTAACCGGTTGAACAATGATCCGCTGGTAGCTCTTCAGTCTTCTGCTAATTTGCCCTTGAATGTCAATGGGGTGAGATCGTCCAATCAGCACCCACAGATGCAGAGTCCACAGtcccagcaccagcaccagcagcagcagcagcagcagcagatATTTCCTAAGCAGAGTGCTATGTCTTATGCAGCTGCTCAAATGCCTCAGGGAATGGTGAGGGGTGGGATGGTGGGGCTTGGTGGTGATCAGGGTTTGGCTGTGCAAGGTGGAGGGATTGGTATGGTTGGTTTGGCACCTGGGCCTGTTCATGTTGCTGCTGGGTCTCCGGCTGCTAACCAGATGGCCGGTGATAAGATTGGAAAGAGCAATGGTAATACCTCGTCTGTGTCGCCGGTTCCTTATGTCTTTAATGGCGGTCTGCGAGGGAGGAAGAGCGGGGGACCTGTGGAGAAGGTGATTGAGAGGAGGCAAAGAAGGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAGCAGgCTTATACGATGGAATTGGAAGCAGAAGTTGCACAGTTAAAGAGGAGAACCAAGAACTTCAGACAAAACAGGCGGAAATCATGGAAATTCAGAAAAACCATGTTAAGGAAATGA 1194 0.5335 MNFKSFGNEAGGGDGGGGRSAGNFSLARQPSVYSLTFDEFVSSMGSSGKDFGSMNMDELLKNIWSAEEVQTMASAGVGAMDGGPGISHLQRQGSLTLPRTLSQKTVDEVWKDISKDHGGPNLAQTQRQPTLGEMTLEEFLVRAGVVREDAKPNDDVLLDLARAGINSGLGLGFQQMNKVAAATGLMGNRLNNDPLVALQSSANLPLNVNGVRSSNQHPQMQSPQSQHQHQQQQQQQQIFPKQSAMSYAAAQMPQGMVRGGMVGLGGDQGLAVQGGGIGMVGLAPGPVHVAAGSPAANQMAGDKIGKSNGNTSSVSPVPYVFNGGLRGRKSGGPVEKVIERRQRRMIKNRESAARSRARKQAYTMELEAEVAQLKRRTKNFRQNRRKSWKFRKTMLRK 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3790 397 CDD bZIP_plant_BZIP46 340 374 - -
Ssu1g3790 397 MobiDBLite consensus disorder prediction 206 245 - -
Ssu1g3790 397 SMART brlzneu 336 396 IPR004827 GO:0003700|GO:0006355
Ssu1g3790 397 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 15 383 - -
Ssu1g3790 397 Coils Coil 363 383 - -
Ssu1g3790 397 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 338 382 IPR004827 GO:0003700|GO:0006355
Ssu1g3790 397 SUPERFAMILY Leucine zipper domain 340 385 IPR046347 GO:0003700|GO:0006355
Ssu1g3790 397 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 15 383 IPR043452 GO:0003700|GO:0045893
Ssu1g3790 397 Pfam bZIP transcription factor 340 385 IPR004827 GO:0003700|GO:0006355
Ssu1g3790 397 Gene3D - 338 391 - -
Ssu1g3790 397 MobiDBLite consensus disorder prediction 1 23 - -
Ssu1g3790 397 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 343 358 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3790 Ssu-Chr1 94935672 94939482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3790 26 372 bZIP Transcription Factor Family AT1G45249 51.948 9.81e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu1g3790 bZIP_1 7.5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3790 K14432 - gmx:100819313 563.533