Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3786 ATGGACACCCTTGAGCAGTTAAAGCCGGAGGAGGAGCAGATGGACatgatgacgatgatgatgCAGCAGCTCCCTCAATTTTGTGAACCATTCGGTGACATTAACATTAACACTAACACCAACACCGACATCGACACCGACACCGACACCGTGCAAGGATTTCATCCCCCAGAGGAGTTCTATGGTAACAACAGCATACGCAACACTATGCCTTGGTCCTCATTCACACACTTACCATCCACGTCCACCACCACAATCTCTTTCTCCAACAACAACCCTACCCCAACAATGcttcaagaagaagaacaaacCCCAACCGCAACCAACAACCCTTACGGTGCGAAGCGGAACTCCATGGCGGCGATGAGGGAGATGATATTCAGAATCGCGGCGATGCAGCCGATACACATAGACCCCGAGTCGGTGAAGCCGCCGAAGCGGAGGAACGTGAAGATCTCGAAGGATCCTCAGAGCGTGGCGGCGCGGCACCGCAGGGAGAGGATCAGCGAGAGAATAAGGATACTGCAGAGACTGGTCCCGGGAGGGACTAAGATGGACACTGCGTCCATGTTGGATGAGGCCATTCACTACGTCAAGTTTCTCAAGACGCAGGTTCAGTCGCTCGAACGAGCTTCCGCTAACAATATTAGGCCACCTGGCGTTAACGCAGGGATAGGGTTCCCTGTTGCTATGTCTAGTAGGAGGACTGCCACCCCTTATTTTCCTCTACCTAAACCTTACGGAGATGCATGA 753 0.5046 MDTLEQLKPEEEQMDMMTMMMQQLPQFCEPFGDININTNTNTDIDTDTDTVQGFHPPEEFYGNNSIRNTMPWSSFTHLPSTSTTTISFSNNNPTPTMLQEEEQTPTATNNPYGAKRNSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERASANNIRPPGVNAGIGFPVAMSSRRTATPYFPLPKPYGDA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3786 250 Pfam Helix-loop-helix DNA-binding domain 161 201 IPR011598 GO:0046983
Ssu1g3786 250 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 4 238 - -
Ssu1g3786 250 SMART finulus 158 207 IPR011598 GO:0046983
Ssu1g3786 250 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 4 238 IPR045843 GO:0003700|GO:0006355
Ssu1g3786 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 210 IPR036638 GO:0046983
Ssu1g3786 250 CDD bHLH_AtIND_like 153 209 - -
Ssu1g3786 250 Gene3D - 151 217 IPR036638 GO:0046983
Ssu1g3786 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3786 Ssu-Chr1 94881282 94882034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3786 118 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 89.796 8.35e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g3786 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3786 - - gmx:100815041 291.967