Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3780 ATGAGTACTCCTGCCGTTCAACTCGTTTCAGAATGCTTCATCAAGCCGCAGCGCCCCACCCATGAATCAAACCACATATGCTATTTAACACCATGGGATATTGCTATGTTGTCTGCACACTATATCCAAAAAGgtcttctcttcaagaagccCGCACCGCTTGTTAATCAAGATGATTTCATTGAGAATCTGTTGGACAAGCTTAAGCACTCCCTTTCCCTCACCCTCTTCCATTTCTATCCATTGGCTGGCCGCCTTGTCACCCACAAAACCCAAGACCCTCCCTTCTATGCTGTTTTTGTTGATTGCAGAAACAGTTCCGGAGCTAAATTTATCCATGCAACTTTGGATATGACCATATCTGATATCCTCTCTCCCCCTGATGTCCTACCCATTGTTCAGTCATTGTTTGATCACCACAGAGCAGTCAACCATGACGGTCATATCATGCCCTTGTTGTCCGTCCAAGTCACTGAACTAGTGGATGGTGTTTTCATAGGTTGTTCCGTGAACCACGCTATTGGTGATGGCACTTCTTACTGGAATTTCTTCAATACATGGTCTCAGATCTTCCAAGCTCAAGCTCAAGGCCACGAACATGATGTTCCCATTTCGCACCCTCCCATTCACAGTCGCTGGTTTCCAGAGGGTTGCGGTCCATTAATCAATCTTCCCTTCAAACATCACGACGAGTTTATTAGCAGATTTGAAGCACCCTTGCTGCGAGAGAGAATCTTCCACTTTTCAGCAGAATCTATTGCAAAACTGAAAGCAAAGGCCAACACGGAGTCCAAGACCACCAAAATCTCTTCGTTCCAATCATTGTCAGCACTTGTTTGGAGATGCATAACTCGCGCGCGCCGCTTGCCATATGATCAGAGAACAAGCTGCAAGTTGTCCACAAACAACCGAACAAGAATGGAACCGGCGCTGCCTCAGGAGTACTTTGGAAACTCGCTTCATACACTGAGTGCAGGAACTGCGACCTCAGGGGAATTGCTTGAGAATGATCTAGGATGGGCAGCATGGAAGTTGCACCTGGCTGTTGCAAACCATAACGACAAAGCGGTGTTGCAATCGCTCAAAGAGTGGTTAGAGTCTCCTTTGATATATCAAATTGGTCGGTATTTTGATCCATACTGTGTGATGATGGGTAGCTCACCCAGGTTCAACATGTATGGGAATGAATTTGGAATGGGGAAGGCGGTGGCCATTAGAAGTGGGTATGCCAACAAATTTGATGGAAAAGTGACGTCATACCCAGGCCATGAAGGAGGAGGAAGCATAGATTTAGAAGTGTGCCTTTCGCCAGGTGTAATGAGTGCGCTGGAATCAGACTTGGAGCTCATGAATGCAGTGTCAGTTTCCAATCCTCTGTAG 1380 0.458 MSTPAVQLVSECFIKPQRPTHESNHICYLTPWDIAMLSAHYIQKGLLFKKPAPLVNQDDFIENLLDKLKHSLSLTLFHFYPLAGRLVTHKTQDPPFYAVFVDCRNSSGAKFIHATLDMTISDILSPPDVLPIVQSLFDHHRAVNHDGHIMPLLSVQVTELVDGVFIGCSVNHAIGDGTSYWNFFNTWSQIFQAQAQGHEHDVPISHPPIHSRWFPEGCGPLINLPFKHHDEFISRFEAPLLRERIFHFSAESIAKLKAKANTESKTTKISSFQSLSALVWRCITRARRLPYDQRTSCKLSTNNRTRMEPALPQEYFGNSLHTLSAGTATSGELLENDLGWAAWKLHLAVANHNDKAVLQSLKEWLESPLIYQIGRYFDPYCVMMGSSPRFNMYGNEFGMGKAVAIRSGYANKFDGKVTSYPGHEGGGSIDLEVCLSPGVMSALESDLELMNAVSVSNPL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3780 459 Gene3D - 6 220 IPR023213 -
Ssu1g3780 459 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 1 453 - -
Ssu1g3780 459 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 1 453 - -
Ssu1g3780 459 Gene3D - 233 446 IPR023213 -
Ssu1g3780 459 Pfam Transferase family 6 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3780 Ssu-Chr1 94764307 94765686 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3780 68 447 Monolignol Biosynthesis Gene Families AT5G48930 29.500 1.71e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3780 - - gmx:100787228 829.706