Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3778 ATGGAGCCGCCTCTGCCACGCGAGAACTTTGGAAGCGCAATTAATGTAGTGAGTGCAGGAAGCACGGCAGGGGAATTGCTTGAGAATGATCTAGAATGGGCAGCATGGCAGGTGCACCTGGCTGTTGCAAACCATAATGACAGAGCGGTGCGACACGTGCTCAAAGAGTGGCTACAACGTCCTGTCGTCTACCAACTTGATATGCACTTTGATTCCTGTAGTGTGACGATGTCAAGTTCACCCAGGTTCAATATGTATGGGAATGAATTTGGGATGGGGAAAGCGGTGGCAGTTCTGAGTGGTTTTGCCAATAAATTTGACGGGAACGTGACAGCATACCCAGGATGTGAAGGAGGGGGAAGCATAGATTTGGAAGTATCCCTTTCGCCTGATGCAATGAGCGCGCTGGAATCAGATGAGGACTTTATGGAAGCTGTTTCTGTGGCCAATCCTCTGCACTAG 462 0.4978 MEPPLPRENFGSAINVVSAGSTAGELLENDLEWAAWQVHLAVANHNDRAVRHVLKEWLQRPVVYQLDMHFDSCSVTMSSSPRFNMYGNEFGMGKAVAVLSGFANKFDGNVTAYPGCEGGGSIDLEVSLSPDAMSALESDEDFMEAVSVANPLH 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3778 153 Pfam Transferase family 1 142 - -
Ssu1g3778 153 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 1 146 - -
Ssu1g3778 153 Gene3D - 1 143 IPR023213 -
Ssu1g3778 153 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 1 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3778 Ssu-Chr1 94734761 94735222 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3778 1 138 Monolignol Biosynthesis Gene Families AT5G48930 24.823 9.30e-07 45.4