Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3776 ATGAGTACCCCTACCGTTCGACGCATTTCAGAATGCTTCGTCAAGCCGCAGCGCCCCACCGAAGTGTCTAACCAAATCTGCAATTTAACACCTTGGGATATTGCTATGTTGTCTGTCCACTATATCCAGAAGGGTCTACTCTTCAAGAAGCCTACAACACTTATTGACCAACAAGATTTCATAGAGAATCTATTGGACAAGCTGAagcactctctttctctcacccTCTCCCATTTCTATCCATTGGCTGGCCGCCTTGTCACCCACAAAACCCAAGACCCTCACTCTTATTCTGTTTTCGTTGATTGCAACAACACTCGTGGAGCTAGATTCATCCATACAACTTTGGATATCACCATATCTGATATCCTCTCCCCCGTTGATGTCCCACCCATTGTTCAGTCATTCTTTGACCACGACAGAGCAGTCAACCACGATGGTCATACCATGCCGCTGTTGTCCATCCAAGTCACCGAACTAATGGATGGTGTTTTCATAGGTTGTTCCATGAACCACACTATTGGCGATGGCACTTCTTATTGGAATTTCTTCAATACATGGTCTGAGATCTTTCAAGCTCAAGCTCAAGGCCATGAATACGATGTTCCCATTTCACACCAACCCATTCACAATCGCTGGTTTCCCAATGATTGCAGCCCACCAATCAATCTTCCTTTCAAACACCATGACGAGTTTATTAGCAGATTTGAAGCACCCTTGCTGAGAGAGAGAATCTTCCACTTATCAGCAGAGTCTATTGCAAAATTGAAAGCAAAGGCCAACTCAGAGTGCAACACCACCAAAATCTCTTCATTCCAGTCATTATCCGCACTTGTTTGGAGATCCATAACTCGTGCGCGCTCACTGCCGTACGACCAGCGAACAAGTTGCAAGTTGGCGGCAAACAATCGATCAAGAATGGAACCGCCTCTGCCTCAGGAATACTTTGGAAACTCAATCCATGCAGTGAGTGCAGAAACGACGACAAGGGAATTGCTTGAGAATAATCTAGGATGGGCAGCATGGGAGTTGCATCTGGCCGTTGCAAACCATAACGACAGAGTGGTGCTGCAATTTCTCCAACAGTGGTTGCAGTCTCCTTTCATATATCACCATGGTCGTTTCTTTGACCCGTGTTGTGTGATGATGGGTAGCTCGCCCAGGTTCAATGTGTATGGGAATGAATTTGGAATGGGGAAAGCGGTGGCAGCTAGAAGTGGGTATGCCAACAAATTTGATGGGAAAGTAACATCATACCCAGGCCATGAAGGAGGGGGAAGCATTGATTTGGAAGTGTGCCTTTCGCCTGATAATATGAGCGCGCTGGAATCAGATGTGGAGTTCATGAATGCAGTTTCGGCGTCCAATCACTTGTACTAG 1380 0.4543 MSTPTVRRISECFVKPQRPTEVSNQICNLTPWDIAMLSVHYIQKGLLFKKPTTLIDQQDFIENLLDKLKHSLSLTLSHFYPLAGRLVTHKTQDPHSYSVFVDCNNTRGARFIHTTLDITISDILSPVDVPPIVQSFFDHDRAVNHDGHTMPLLSIQVTELMDGVFIGCSMNHTIGDGTSYWNFFNTWSEIFQAQAQGHEYDVPISHQPIHNRWFPNDCSPPINLPFKHHDEFISRFEAPLLRERIFHLSAESIAKLKAKANSECNTTKISSFQSLSALVWRSITRARSLPYDQRTSCKLAANNRSRMEPPLPQEYFGNSIHAVSAETTTRELLENNLGWAAWELHLAVANHNDRVVLQFLQQWLQSPFIYHHGRFFDPCCVMMGSSPRFNVYGNEFGMGKAVAARSGYANKFDGKVTSYPGHEGGGSIDLEVCLSPDNMSALESDVEFMNAVSASNHLY 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3776 459 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 1 452 - -
Ssu1g3776 459 Pfam Transferase family 8 449 - -
Ssu1g3776 459 Gene3D - 233 445 IPR023213 -
Ssu1g3776 459 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 1 452 - -
Ssu1g3776 459 Gene3D - 1 223 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3776 Ssu-Chr1 94727589 94728968 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3776 48 443 Monolignol Biosynthesis Gene Families AT5G48930 27.830 4.33e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3776 - - gmx:100775661 777.319