Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3774 ATGAACCACACTATTGGCGATGGCACTTCTTATTGGAATTTCTTCAATACATGGTCTGAGATCTTTCAAGCTCAAGCTCAAGGCCATGAATACGATGTTCCCATTTCACACCAACCCATTCACAATCGCTGGTTTCCCAATGATTGCAGCCCACCAATCAATCTTCCTTTCAAACACCATGACGAGTTTATTAGCAGATTTGAAGCACCCTTGCTGAGAGAGAGAATCTTCCGCTTTTCAGCAGAGTCCATAGCAAAATTGAAAGCAAAGACTAACTCAGAGTCCAATACTAATACCAGCAAAATCTCTTCATTCCAGTCATTATCCGCACTTGTTTGGAGATCCATAACTCGTGCGCGCTCCCTACCGTACGATCAAATAACAAGTTGCAAGATGGCCATAAACAATCGATCAAGAATTGAACCGCCTCTGCCCCAGGAATACTTTGGAAACTTAATTCAAGTAGTGAGTGCAGAAACAACAACAGGGGAATTGCTTGAGAATGATCTAGGATGGGCAGCTTGGAAGTTGCACCTGGCTGTTGTAAACCATAACGACAAAGCGGTGTTGCAATCGCTCAAAGAGTGGTTAGAGTCTCCTTTGATATATCAAATTGGTGGGTTAAATCCGTACAGTGTATTGATGGGTAGCTCGCCCAGGTTCAACATGTATGGGAATGAATTTGGAATGGGGAAAGCGGTGGCGGTTAGAAGTGGGTATGCCAACAAATTTGATGGGGAAGTGTCATCATACCCAGGTCGTGAAGGAGGGGGAAGCATTGATTTGGAAGTGTGCCTTTTACCACATACAATGAGCGCTCTGGAATCAGACGAGGAGTTTATGAATGCAGTTTCGGTGTCGATTCCCCTGTGCTAG 876 0.4441 MNHTIGDGTSYWNFFNTWSEIFQAQAQGHEYDVPISHQPIHNRWFPNDCSPPINLPFKHHDEFISRFEAPLLRERIFRFSAESIAKLKAKTNSESNTNTSKISSFQSLSALVWRSITRARSLPYDQITSCKMAINNRSRIEPPLPQEYFGNLIQVVSAETTTGELLENDLGWAAWKLHLAVVNHNDKAVLQSLKEWLESPLIYQIGGLNPYSVLMGSSPRFNMYGNEFGMGKAVAVRSGYANKFDGEVSSYPGREGGGSIDLEVCLLPHTMSALESDEEFMNAVSVSIPLC 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3774 291 Gene3D - 1 55 IPR023213 -
Ssu1g3774 291 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 1 284 - -
Ssu1g3774 291 Gene3D - 72 281 IPR023213 -
Ssu1g3774 291 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 1 284 - -
Ssu1g3774 291 Pfam Transferase family 1 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3774 Ssu-Chr1 94718851 94719726 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3774 1 275 Monolignol Biosynthesis Gene Families AT5G48930 29.897 2.86e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3774 - - gmx:100795679 501.13