Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3770 ATGATGAGTACCCATGCCGTTCGCCACGTTTCAGAGTGCTTTGTCCAGCCACATCGTCCAACCCAAGAGTCAAACCATATCTGCTATTTAACACCTTGGGATATTGCTATGTTGTCTAAGCACTATATCCAGAAGGGTCTACTCTTCAAGAAGCCTGCAACACTTGTTGATCAACAAGATTTCATAGAGAATCTGTTGGACAAGCTGAAGCACTCTCTTTCTCTCGcccttttccatttccatccATTGGCTGGTCGCCTTGTCACACACAAAACCCAGGACCCTCCCTCTTATTCTGTTTTCGTTGATTGCAACAACAGTGCTGGAGCTAGATTCATCTATGCAACTTTGGATATCAATATAGTTGACATCCTCTCCGCCGTTGATGTCCCACCCATTGTTCAATCATTGTTTGACCACCATAGAGCGGTCAACCATGATGGTCATATCATGCCCTTGTTGTCCGTCCAAGTCACTGAACTAGTGGATGGTGTTTTCATAGGTTGTTCCATGAACCACGCTATTGGTGATGACACTTCTTATTGGAATTTCTTCAATACATGGTCTCAGATCATTCAAGGTCAGTCAAGCTCAAGTGCAATGAATATGATGCTCCCATTTTGCATCAACCCATTCACAATCGCTGGTTTCCAGGGGTTGCAATCCATTAATCAATCTTCCCTTCAAACATCACGACGAGTTTATTAG 708 0.4251 MMSTHAVRHVSECFVQPHRPTQESNHICYLTPWDIAMLSKHYIQKGLLFKKPATLVDQQDFIENLLDKLKHSLSLALFHFHPLAGRLVTHKTQDPPSYSVFVDCNNSAGARFIYATLDINIVDILSAVDVPPIVQSLFDHHRAVNHDGHIMPLLSVQVTELVDGVFIGCSMNHAIGDDTSYWNFFNTWSQIIQGQSSSSAMNMMLPFCINPFTIAGFQGLQSINQSSLQTSRRVY 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3770 235 Pfam Transferase family 10 198 - -
Ssu1g3770 235 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 1 197 - -
Ssu1g3770 235 Gene3D - 8 233 IPR023213 -
Ssu1g3770 235 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 1 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3770 Ssu-Chr1 94658789 94659496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3770 49 194 Monolignol Biosynthesis Gene Families AT5G48930 30.263 2.44e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3770 - - gmx:100775661 327.791