Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3769 aTGGCGCAAATTCATGAGAATCCTACTAATGACGCAGCAGTTTCCAGTGCAAACCCGTCGCTAATCACCACCTCGTTGTATATTGGGGATCTTGACCACGATATCAATGATTCCCAGCTTTATAATCTCTTCAACCAGGTTGGCCATGTTGTTTCCGTTCGAGTTTGTAGGGACTTGGCCTCCCAACAATCCCTTGGTTATGGCTACGTCAATTTCAGTAATCCTCACGATGCCGCAAAAGCATTAGATGTGCTAAATTTCACTTCATTGAATGGCAAAGCCATTAGGATCATGCATTCTCTTCAAGACCCTAGTGCTGGGAAGAGTAGTTCtgctaatgtttttataaagAATTTGGATAAGACAATTGATCACAAGGCTTTATGCAATACTTTTTCGGCTTTTGGGAATATTCTTTCTTGCAAGATTGCTATGGATGCTTCTGGTCAGTCCAAAGGCCATGGTTTTGTGCAGTTTGAGAGTGAGGAATTTGCACAAAATGCAATTGACAAGTTAAACGGCATGTTGATTAATGATAAACAGGTCTATGTGGGTCATTTCTTGCGAAAGCAGGATAGAGAAAGTGCTCTTAGTGGTGCGCAGTTTAATAATGTCTATGTGAAAAACCTATTGGAGTCAACAACAAATGATGACTTGAAGAGAATTTTTGGAGAACATGGAGCTATTACTAGTGTTGTAGTGATGAGAGATGTAGATGGTAAATCAAAATGTTTTGGTTTTGTCAATTTTGCAAATCCAGGCGATGCTGCTAAAGCTGTAGAGGCACTTAATGGAAAGAATTTTGATGGTAAGGAGTGGTATGTTGGAAGAGCCCAGAAAAAATCTGAAAGGGAGCTTGAACTAAAAGGACGACGACATGAGCAGAGTACGAAGGATGGTGTTGATAAATATCAAGGTGCAAACTTGTATATCAAGAACTTGGACGATAGTGTTGGTGATGAAAAACTCAAGGAACTATTTTCTGAGTTTGGTGCAATAACCTCATGCAAGGTTATGCAAGATCCACAAGGAATTAGTAAAGGATATGGATTTGTTGCCTTTTCGACTCCTGAGGAAGCAACTCAAGCTCTTGGTGAGATGAATGGCAAAATGGTTGCTAATAAACCTCTCTATGTTGCCCTTgcacaaagaaaagaagagaggagAGCAAGGTTACAGGCACAGTTTTCACAAATGAGGCCTGTTGCAATAGCCCCTTCTGGTGCACCTCGAATGCCACTATACCCTCTAGGGACTCCTGGGATAGGACAATTTTTGTACGGGCAAACACCTCTAGCCATCATACctcaaGCTGGATTTGGTTACCAGCAGCATCTTGTTCTTGGAATGAGACCAAGTGGTGCTCCAATGCCAAACTTCTATGTTCCACTGGTTCAGCTGGGTCAACAGGGGCTGCACCTAGGAGGACACCAAGGAGAAGGTCCTATGCACCAACTCCAGCAGCCACTACCATTGATGCAGCAACAGATGCTTCCTTGGGGACACATCTATCGTTATCCTCCTGGCTCCAACCTGCCAAATATTCAACTGGCGGGAGTAGCTGGAGGAATGGTTGCAGTCCCTTATGGCATGGTTGGTCAGCCAATGCTCATTCAGGCCTTGGCCATGGCCCTTACCAATGCTACTCCTGAACAAAAGAGGAGTATGCTTGGTGAAGCTTTATACCCGTTAGTAGATAAGCTGGAGCATGATGCGGCAGCAAAGGTTACCGGTATGCTTTTAGAGATGGACCAGCACGAGGTATTACATCTGATTGAGTCACCAGATGCTCTCAAGGCAAAAGTTGCTGAGGCCATGGAAGTGTTGAGAAAAGTTACACAGCAGCAATCAGGCAGCCCAGCCGATCAACCGGCTTCAGTCTCTCTGAATGACGATCTCGAGTCTTAG 1908 0.4313 MAQIHENPTNDAAVSSANPSLITTSLYIGDLDHDINDSQLYNLFNQVGHVVSVRVCRDLASQQSLGYGYVNFSNPHDAAKALDVLNFTSLNGKAIRIMHSLQDPSAGKSSSANVFIKNLDKTIDHKALCNTFSAFGNILSCKIAMDASGQSKGHGFVQFESEEFAQNAIDKLNGMLINDKQVYVGHFLRKQDRESALSGAQFNNVYVKNLLESTTNDDLKRIFGEHGAITSVVVMRDVDGKSKCFGFVNFANPGDAAKAVEALNGKNFDGKEWYVGRAQKKSERELELKGRRHEQSTKDGVDKYQGANLYIKNLDDSVGDEKLKELFSEFGAITSCKVMQDPQGISKGYGFVAFSTPEEATQALGEMNGKMVANKPLYVALAQRKEERRARLQAQFSQMRPVAIAPSGAPRMPLYPLGTPGIGQFLYGQTPLAIIPQAGFGYQQHLVLGMRPSGAPMPNFYVPLVQLGQQGLHLGGHQGEGPMHQLQQPLPLMQQQMLPWGHIYRYPPGSNLPNIQLAGVAGGMVAVPYGMVGQPMLIQALAMALTNATPEQKRSMLGEALYPLVDKLEHDAAAKVTGMLLEMDQHEVLHLIESPDALKAKVAEAMEVLRKVTQQQSGSPADQPASVSLNDDLES 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3769 635 SUPERFAMILY PABC (PABP) domain 488 621 IPR036053 GO:0003723
Ssu1g3769 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 384 IPR000504 GO:0003723
Ssu1g3769 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 96 IPR000504 GO:0003723
Ssu1g3769 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 377 IPR000504 GO:0003723
Ssu1g3769 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Ssu1g3769 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Ssu1g3769 635 SMART rrm1_1 308 380 IPR000504 GO:0003723
Ssu1g3769 635 SMART rrm1_1 204 276 IPR000504 GO:0003723
Ssu1g3769 635 SMART rrm1_1 113 185 IPR000504 GO:0003723
Ssu1g3769 635 SMART rrm1_1 25 98 IPR000504 GO:0003723
Ssu1g3769 635 PANTHER RNA BINDING PROTEIN 16 619 - -
Ssu1g3769 635 SUPERFAMILY RNA-binding domain, RBD 24 193 IPR035979 GO:0003676
Ssu1g3769 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Ssu1g3769 635 SMART poly_2 549 612 IPR002004 GO:0003723
Ssu1g3769 635 MobiDBLite consensus disorder prediction 612 635 - -
Ssu1g3769 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Ssu1g3769 635 SUPERFAMILY RNA-binding domain, RBD 203 388 IPR035979 GO:0003676
Ssu1g3769 635 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 25 610 IPR006515 GO:0003723
Ssu1g3769 635 CDD RRM1_I_PABPs 25 104 - -
Ssu1g3769 635 PANTHER POLYADENYLATE-BINDING PROTEIN 16 619 - -
Ssu1g3769 635 Gene3D - 534 616 - -
Ssu1g3769 635 Gene3D - 2 100 IPR012677 -
Ssu1g3769 635 SMART rrm2_1 204 276 IPR003954 GO:0003676
Ssu1g3769 635 SMART rrm2_1 113 185 IPR003954 GO:0003676
Ssu1g3769 635 SMART rrm2_1 308 380 IPR003954 GO:0003676
Ssu1g3769 635 SMART rrm2_1 25 98 IPR003954 GO:0003676
Ssu1g3769 635 Pfam Poly-adenylate binding protein, unique domain 545 609 IPR002004 GO:0003723
Ssu1g3769 635 CDD RRM3_I_PABPs 202 281 - -
Ssu1g3769 635 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 537 614 IPR002004 GO:0003723
Ssu1g3769 635 CDD RRM4_I_PABPs 306 384 - -
Ssu1g3769 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Ssu1g3769 635 CDD RRM2_I_PABPs 112 186 IPR045305 -
Ssu1g3769 635 Gene3D - 188 287 IPR012677 -
Ssu1g3769 635 Gene3D - 111 186 IPR012677 -
Ssu1g3769 635 Gene3D - 288 396 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3769 Ssu-Chr1 94623511 94638828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3769 23 633 Eukaryotic Initiation Factors Gene Family AT1G49760 61.882 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3769 K13126 - gmx:100778879 957.207