Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3767 ATGGCCCACCCTTGTCCACACGCGCTCATTCCATCCAAGCCTAAAAAAAggGCAACACCTCATTTCCCACTTTGTGCACTTTATAGTATAGTGTCCTCTCATCCTTCTCTATATAACCACCGATATTCCTATCATCCTCTTCTCTCCACCATGGGCAGCATGAAGGTGCATCAGGTCACACGTGGATTCTGGGAGCACGAGCCTTTCCTCACGCTTGGGTGCAAGCGATTACGCCCTCTTGCTCCCAAGCTTCCTAACACCGACACTACCACTACTCCTTCTGTTCCTTTCGATCTCAAGAGCTTCATCAGGCCAGAAAGTGGCCCCAGAAAACTCGTTTCCTCTGACGACACTAAGAAAGATCCACCTTCACCCCAAGGCCAGGCTGAAACGCATCCAGGAGGGACACGGTGGAATCCGACGCAAGAACAGATAGGCATATTGGAGATGCTTTACAAAAGAGGGATGCGAACTCCAAATGCTCAACAGATAGAGCAGATCACGGTCCAGCTTGGCAAGTACGGTAAGATCGAAGGGAAGAATGTGTTCTATTGGTTTCAGAATCACAAAGCACGCGAGAGACAAAAGCAGAAGCGCAGCAGCCTTAGCTTTTCTCATAGTCCTCGAACTCCCACCATTCATAGTGTTGTTACTTTGGAGACCACAAGAGGGGAAGTAGTAGAAAGAGATTATGAGGAGGACAGTCCGTACAAGAAGAAGTGTAGGAGATGGGTATTTGAGTGCTTGGAAGACCAAAGCAGGTCACTATGTGAAGAGGAGGAACATAGAACTCTGGAGCTTTTCCCATTGCACCCGGAAGGCAGATGA 828 0.4855 MAHPCPHALIPSKPKKRATPHFPLCALYSIVSSHPSLYNHRYSYHPLLSTMGSMKVHQVTRGFWEHEPFLTLGCKRLRPLAPKLPNTDTTTTPSVPFDLKSFIRPESGPRKLVSSDDTKKDPPSPQGQAETHPGGTRWNPTQEQIGILEMLYKRGMRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQKRSSLSFSHSPRTPTIHSVVTLETTRGEVVERDYEEDSPYKKKCRRWVFECLEDQSRSLCEEEEHRTLELFPLHPEGR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3767 275 Pfam Homeodomain 136 195 IPR001356 GO:0003677
Ssu1g3767 275 CDD homeodomain 136 197 IPR001356 GO:0003677
Ssu1g3767 275 ProSiteProfiles 'Homeobox' domain profile. 131 196 IPR001356 GO:0003677
Ssu1g3767 275 Gene3D - 136 201 - -
Ssu1g3767 275 SMART HOX_1 133 200 IPR001356 GO:0003677
Ssu1g3767 275 PANTHER WUSCHEL-RELATED HOMEOBOX 4 54 275 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Ssu1g3767 275 MobiDBLite consensus disorder prediction 119 140 - -
Ssu1g3767 275 MobiDBLite consensus disorder prediction 81 140 - -
Ssu1g3767 275 SUPERFAMILY Homeodomain-like 133 203 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3767 Ssu-Chr1 94572627 94574149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3767 54 202 Wox Gene Family AT1G46480 64.815 5.80e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu1g3767 Homeodomain 1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3767 - - gmx:100781015 426.787