Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3766 ATGGAAGAAGAAGGAGATTGTTGTTCCTCGAATTCGACGATCACGAGAAACAGCAGCGGGAAACGGAAgcagcagcaacaacagcaCCAAGAGAAGCCATACAGAGGAATAAGGATGAGGAAGTGGGGTAAGTGGGTGGCGGAGATTAGAGAACCCAACAAGAGGTCGAGGATCTGGTTGGGTTCTTACGCCACCCCTGTCGCCGCCGCACGCGCCTACGACACCGCCGTGTTCTACCTCAGAGGCCCTTCCGCTCGCCTCAACTTCCCCGAATTGCTGTCCCAAGACGACGACGTTTCCACCCAACAAGGCAACATGTCCGCCGATTCGATACGCAAAAAAGCGACCCAAGTCGGCGCCAGAGTCGACGCGCTCCAAACCGCGCTTCAATCCTCATCATCGCACTCCGCTTCCAGCCACGTCACCTCGGACAAACCAGACTTGAACGAGTATCCAAAACCTGAAGATTAA 471 0.5287 MEEEGDCCSSNSTITRNSSGKRKQQQQQHQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYATPVAAARAYDTAVFYLRGPSARLNFPELLSQDDDVSTQQGNMSADSIRKKATQVGARVDALQTALQSSSSHSASSHVTSDKPDLNEYPKPED 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3766 156 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Ssu1g3766 156 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 8 156 - -
Ssu1g3766 156 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Ssu1g3766 156 MobiDBLite consensus disorder prediction 97 156 - -
Ssu1g3766 156 MobiDBLite consensus disorder prediction 97 112 - -
Ssu1g3766 156 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Ssu1g3766 156 MobiDBLite consensus disorder prediction 1 36 - -
Ssu1g3766 156 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 8 156 - -
Ssu1g3766 156 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Ssu1g3766 156 MobiDBLite consensus disorder prediction 123 145 - -
Ssu1g3766 156 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Ssu1g3766 156 PRINTS Ethylene responsive element binding protein signature 72 92 IPR001471 GO:0003700|GO:0006355
Ssu1g3766 156 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Ssu1g3766 156 MobiDBLite consensus disorder prediction 7 24 - -
Ssu1g3766 156 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3766 Ssu-Chr1 94538013 94538483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3766 27 156 AP2-EREBP Transcription Factor Family AT2G23340 56.250 7.91e-51 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g3766 AP2 5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3766 K09286 - gmx:100801528 253.447