Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3762 ATGCCGAACAGGAACCACCTCATTCATCCACACTTATTCCAGTCACTGTTCCTGCTACTGCTAGCGTCAAACGCACATTGCTCCGAACTCCCGCGCCGTCATCTCCCGCCGTTAGTTTTCACGGACGCTAGCGCCCTCATAGCGTTCAAACTAAAAGCCGACCTGAACAACCACCTCTTGGACTTCTCCCCCGTCACGCGCGGCCTCCGCTTCTGCGCGTGGCAAGGCGTGGACTGCTACAACAACGGACCCAAAGTGGTGCGTCTCGTTCTGCAGAACTTAGATCTCGGAGGCGTGTGGGCTCCCAACACACTCACGCGTCTCGACCAGCTCCGAGTCCTTAGTTTGCAGAACAACTCGCTCACCGGACCCGTACCGGACCTCACCGCTCTCTTCAATCTCAAAAGCCTCTTCCTCGATAACAACCACTTCACCGGTTCTCTCCCTCCGTCGCTCTTCTCGCTCCACCGTCTCCGAAACGTGGATTTCTCTCACAACAATCTCTCCGGACCAATCTCCGCCGCGTTCACCGACCTCGACCGCCTTCACAGCCTCCGTCTCGTTTGGAACGCTTTCAACGGTTCAATCCCTCCGTTTAACCAATCCTCTCTCAAAATCTTTGAGGTTTCCGGCAACAACCTCTCCGGCGCGATTCCGGTGACTCCAACGCTGTTCCGTTTTCCGGCTTCCTCCTTTTCCTTCAACCCTAACCTCTGCGGCGAAATCATCCGCGTGCAATGCCGTCCCTCGCAGCCGTTCTTCCGACCCGCGGCGCCGCCTGCGGCGGTGCTCGGCCAGAGCGCGCAGGTGCACGGCGTCGGCGGTTTAATCCAGCAGCCGTACGAGAAGAAGCGCCGCGACCGGCGTGCGCTGATAATCGGATTCTCCGCCGCAGTGTTCGTTCTGGTCTGTTCGCTGGCGTGCTTCGCGGCGGCGGTGAGGAAGCAGAGGAGTAAGAGCAAGAAGGACGGACGACCGGGGATGATGGAGGCGGACACGGCGGCGTCGGCGGAGGCAGCGGCGGTGATGCAGATGGAGCTGGAGAGGGAGCTGGCGGAGAAGGTGAAGAGAGCGGAGGTGGCGAAGAGTGGGAGCTTGGTATTCTGTGCGGGGGAGGCGCAGGTGTATACGCTGGACCAGCTGATGAAAGGTTCTGCGGAGCTCTTGGGGAGAGGGTGTTTGGGAACCACTTATAAGGCGGTTCTCGATAACCGTCTGATGGTGACGGTGAAGCGCCTTGATGTTACGAAAATGGCAGCGCATGCAACTAAGGAAGTGTTCGAGCGACACATGGAAGCCGTTGGTGGGCTTCGACACCCCAATTTGGTTCCGCTTAGGGCATATTTCCAGGCCAAGCAAGAGAGGCTCATTATCTATGATTTTCAGCCCAACGGCAGCCTCTTCTCCCTCATACACGGTTCGAGATCAAGCAGGGCAAGGCCATTGCATTGGACATCATGCTTAAAAATAGCAGAGGACGTAGCACAAGGTCTGGCCTTCATCCACCAGGCATGGAGACTAGTCCACGGCAATCTCAAGTCCTCCAATGTTCTCCTTGGACCTGATTTCGAGGCTTGCATCACAGACTACTGCCTGTCCGTGTTGACACACCCATCCATATTTGATGAAAATGGGGATTCAGCAGCCTACAGAGCTCCAGAGACTCGCAACCCAAATCATCACCCAACCCACAAATCCGATGTTTATGCCTATGGGATTTTGTTGCTTGAGCTTCTGACTGGGAAATTTCCCTCCGAGCTTCCATTCATGGTTCCTGGTGATATGTCATATTGGGTAAGGTCCATCAGGGATGACAATGGGGGCGAAGATAGCCGAATGGACATGCTTCTTCAGGTGGCTACAACTTGTAGCCTGACCTCGCCTGAGCAGAGGCCAACTATGTGGCAGGTCTTGAAGATGTTGCAGGAAATCAAAGAGATTGTACTATTGGAGGATACTAGTGAATTGGACCTTCGCAGTAGTAATGCCATGccttag 1998 0.5536 MPNRNHLIHPHLFQSLFLLLLASNAHCSELPRRHLPPLVFTDASALIAFKLKADLNNHLLDFSPVTRGLRFCAWQGVDCYNNGPKVVRLVLQNLDLGGVWAPNTLTRLDQLRVLSLQNNSLTGPVPDLTALFNLKSLFLDNNHFTGSLPPSLFSLHRLRNVDFSHNNLSGPISAAFTDLDRLHSLRLVWNAFNGSIPPFNQSSLKIFEVSGNNLSGAIPVTPTLFRFPASSFSFNPNLCGEIIRVQCRPSQPFFRPAAPPAAVLGQSAQVHGVGGLIQQPYEKKRRDRRALIIGFSAAVFVLVCSLACFAAAVRKQRSKSKKDGRPGMMEADTAASAEAAAVMQMELERELAEKVKRAEVAKSGSLVFCAGEAQVYTLDQLMKGSAELLGRGCLGTTYKAVLDNRLMVTVKRLDVTKMAAHATKEVFERHMEAVGGLRHPNLVPLRAYFQAKQERLIIYDFQPNGSLFSLIHGSRSSRARPLHWTSCLKIAEDVAQGLAFIHQAWRLVHGNLKSSNVLLGPDFEACITDYCLSVLTHPSIFDENGDSAAYRAPETRNPNHHPTHKSDVYAYGILLLELLTGKFPSELPFMVPGDMSYWVRSIRDDNGGEDSRMDMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLEDTSELDLRSSNAMP 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3762 665 Gene3D Ribonuclease Inhibitor 156 240 IPR032675 -
Ssu1g3762 665 ProSiteProfiles Protein kinase domain profile. 383 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3762 665 Gene3D Transferase(Phosphotransferase) domain 1 463 657 - -
Ssu1g3762 665 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 653 - -
Ssu1g3762 665 SUPERFAMILY Protein kinase-like (PK-like) 387 642 IPR011009 -
Ssu1g3762 665 Gene3D Phosphorylase Kinase; domain 1 352 461 - -
Ssu1g3762 665 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 14 653 - -
Ssu1g3762 665 Gene3D Ribonuclease Inhibitor 41 155 IPR032675 -
Ssu1g3762 665 Pfam Leucine rich repeat 133 191 IPR001611 GO:0005515
Ssu1g3762 665 SUPERFAMILY L domain-like 66 239 - -
Ssu1g3762 665 Pfam Protein kinase domain 387 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3762 Ssu-Chr1 94434735 94438077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3762 42 663 Receptor kinase-like Gene Family AT5G43020 56.338 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu1g3762 Pkinase 3.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3762 - - gmx:100817172 1149.81