Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3759 ATGCTGTCTTCTGGAGGATATTACCTCGAAACTTTCCTCCACCAAGGTGGGAATTTGGAGGAACTGCTCTTGATCTCTCCAAAGGAAATAAAAGGAACTGGATACTTGTCTGGGAAGACTGGGTTCTGCGATTTTAACGAATGCGAGCAAAGGAAGAGTGGTAGTGGTTACTTGAGCGGTAGATTTGGAGCTGACGTATTCTTCAAAATGTCACATGAGGTTTACAATTACGGAGAGGGACTACTTGGAAAAGTTGCCGCAGATAACAGTCACAAATGGGTTTACAATGAGAGTCACAGTGAGTGTGAACCTAGCTATGTTGCTTCATGGAATGCTTCAGTAGAGCCTCAACCAAAGGCGTGGGAGTTTCAGTTCAATTCAGGCATTCAGAGTATTGTCATAATCGCCGTCAGAGAAGGCGTAGTGCAATTGGGTTCTTTTAACAAGATTGCAGAGGACCTGAATCTGGTCATCAGCATACAAAGGCAATTCAGCTACCTTCAAAGCATACCGAGTGTATTCGGTATTCAAAGACCATACCTACCCATCCAACATCCATACATTGTGAAGCCCAGTTTCATTGAAAGCAATAACGGAATGCCTCTATCTACCTATGATATGGGCTGGAACCCCCCTCAGAATGGAGCACCAGGCCCATCTCTTTCTTCAGGTCCTCCTCCTTTACCATTACCAACCATGCCTTGCAGTTTTGGAGCTTTGCTATCAAAGTTACCATCTGGAATCCCACCCCATAATTCCACTCAAGTCCCTAATGCAGGGACACAAAGCACCATTGAGAGAATGAAGACTGAGGACTGCGAATTTCATCCTACCCATGATGGTGATCAGAAAGGAAAGGTTGGCTCCTTGAACAAGTAG 879 0.4494 MLSSGGYYLETFLHQGGNLEELLLISPKEIKGTGYLSGKTGFCDFNECEQRKSGSGYLSGRFGADVFFKMSHEVYNYGEGLLGKVAADNSHKWVYNESHSECEPSYVASWNASVEPQPKAWEFQFNSGIQSIVIIAVREGVVQLGSFNKIAEDLNLVISIQRQFSYLQSIPSVFGIQRPYLPIQHPYIVKPSFIESNNGMPLSTYDMGWNPPQNGAPGPSLSSGPPPLPLPTMPCSFGALLSKLPSGIPPHNSTQVPNAGTQSTIERMKTEDCEFHPTHDGDQKGKVGSLNK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3759 292 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 40 196 - -
Ssu1g3759 292 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 197 272 - -
Ssu1g3759 292 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 197 272 - -
Ssu1g3759 292 MobiDBLite consensus disorder prediction 246 292 - -
Ssu1g3759 292 MobiDBLite consensus disorder prediction 209 228 - -
Ssu1g3759 292 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 40 196 - -
Ssu1g3759 292 MobiDBLite consensus disorder prediction 247 266 - -
Ssu1g3759 292 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 66 164 IPR025610 -
Ssu1g3759 292 MobiDBLite consensus disorder prediction 267 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3759 Ssu-Chr1 94367924 94369616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3759 69 168 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 38.614 2.73e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3759 - - gmx:100793250 363.229