Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3749 ATGATGCTACCAATGTTGTCACTACCGTTGCTGTTGTTGCCAACAACACCACCCCTATCATTGTTGCCACCCCCAACACAGTTGTGTGACAATAGTGGCGTGGtagcagtggtggtgacaacaatggCAAGGGGCGACGGTGGTAGTGACAGTGGTTGGGACATTGATGTCGGTGacagatcatatatatatgaatgCAATGCACATCCTACTCTTCCTCCTTCTCCTCTTCGTCTCAACTTCGTCTGGGCGATAGATACACTCCCAGAAGGCTCCTCACTTTCAGTAGAGAAACAAACTGACACCCTCCTTTCAGCCAACGGAGACTTCTCCGCTGGCTTCTTCCAAGTCGGGGAAAACGCCTTCTGCTTCTCTGTATGCTTCACAAGGTCCAAACCACCCACCGTTATATGGATGGCCAACCGTGACGAACCCGTCAACGGCAAAGGCTCACACCTATCGCTCTGGAAAAACGGAAACCTCGTTTTGACGGACGCAGGAGGAGACATTATCTGGACAACCACCACTGTCTCCTCCTTCCAGTTACATCTAAAGGTAACGAACAACGGCAACCTCGTTCTTGTCGCTTCAAACGGCACTGTCGTTTGGCAAAGCTTTGATTCCCCAACAGACACCCTTCTTTCTTCCCAACCACTCACGGAGCGAGCAAGCCTGGTTTCATCGAGAAGCACAACGAACTATTCCTCTGGCTTCTACAAACTTTACTTCGACAACGACAACGTTCTTCGATTACTCTACAAAGGTCCCACGTTTTCCAGCGTGTACTGGCCGGCCCCGTGGGAGCTTCCAATTGACATAGGCAGATCCACCTACAATGTAACCAAAACCGCCGTCTTAGACCCCTTTGGACGGTTCACTTCCTCTGATGGGTTTCAATTCGTTTCCACCGATTATCGGAGAAAAGTGTATAGAAGACTCAAGATGGACCCTGACGGTAACTTgcgtttgtatagcttcaacgAGGAGCATAGGATGTGGGAGGTGACGTGGCAACTTATTCCCCAACCGTGTACCGTTCACGGCATTTGCGGAGCTAACAGCATGTGCACTTATGATCCTGTCGTCGGAAGGACTTGCTACTGCTTGAAAGGATTTAAGGTTAAGGATCCTAATGATTGGACGCAGGGTTGCGAGCCTGAGTTTGatccttcttatttttcttgcaACAGTGGCAAGTCTGTGGATTTCCTCCACCTTCGAACCACGGAATTGTACGGGTATGACTGGAACGTGACTCGCGTTTCGAGCTTGAAGGAATGCCAAAATATATGCCTGCAACTTTGTGATAAATGCAGAGGTGTCCAATTCAAGTTCAACGATGTTGCTACCTATAATTGTTACCCGAAAACGATGGTATTCAACGGACGGGATTCCCCCAATTTCGACGGGGAGATGTATCTAAAATTGCCGAAAGCGATTTTGCTCTCGTCCTCCAAGCCTGTTAAACATTCCCCGATGAACTGTCCCGTTGGTTTGTCTCAACGCCTGAAGAGGTTTTATCCAACGCCTAGAAAAAACTCCACGTTGAGTTTCTTGGTTTGGTTCGCTTGCGGGATAGGGGCGTTTGAGTTGTCCACCATTTTTCTTGTGTGGTTCTTCTTGTTTAGAACTAGCAAGCAACCTGACACGGTGGATCAACAACGGCACCTTCTTTCTGCCACGGGGTTTCAACGGTTCACCTACGCAGAGCTCAAAAGCGCGACAAAGGGGTTCAGTAAGGAGACTGGGCGAGGAGCGGGTGGGGTCGTTTACAAAGGGACATTGTATGACCATCGCGTTGCGGCTGTTAAACGCCTAAGCGAAGCTAATCAGGGAGAGGCTGAATTTTTAGCTGAAATAAGCACAATTGGCATGTTGAACCACATGAATTTGATTGACATGTGGGGATACTGCGTTGAAGGGAAGCACAGGCTGTTGGTGTATGAGTACATGGAACATGGGTCCTTGGCAGACAATCTCTTTTCCAATGCACTTGATTGGAAGAAGAGGTTTAACGTTGCTGTGGGTACGGCGAAAGGTTTGGCTTATTTACATGAAGAGTGTTTGGAGTGGATTTTGCATTGCGATGTGAAGCCTCAAAACATTCTCCTCGACTCGGATTTCCAACCCAAGGTAGCAGATTTTGGCCTGtcaaaacttttaaatagaGACGAGCGTGGCAATTCTAATTTTTCCAGAATAAGAGGGACTCGAGGTTACATGGCTCCGGAGTGGGTCTACAATCTTCGCATTACTTCTAAGGTGGACGTTTATAGCTATGGGATTGTTGTGTTGGAAACGGTGAGTGGAAGGAGCCCTATGGAATTAATCCACGGCCTTGAGAACAGTAGGGGCATAGAGCAGCGGCGGTTGGTGACGTGGGTAACAGACAAGATAAACCATGCAGCCACAAGGGAGTTTTGGATTGAGGAGATAATTGATCCTAACTTGGAAGGCCGATACGACGCTGCACAAGTTGAGATTTTGGTTAAAGTGGCTTTGCAGTGTGTGCAAGATGACATGAATGAAAGACCGTCCATGAGCCAAGTAGCGGAGATGCTTCAGTCCCATGAAAATAAGACTCCTCCCTAG 2592 0.4664 MMLPMLSLPLLLLPTTPPLSLLPPPTQLCDNSGVVAVVVTTMARGDGGSDSGWDIDVGDRSYIYECNAHPTLPPSPLRLNFVWAIDTLPEGSSLSVEKQTDTLLSANGDFSAGFFQVGENAFCFSVCFTRSKPPTVIWMANRDEPVNGKGSHLSLWKNGNLVLTDAGGDIIWTTTTVSSFQLHLKVTNNGNLVLVASNGTVVWQSFDSPTDTLLSSQPLTERASLVSSRSTTNYSSGFYKLYFDNDNVLRLLYKGPTFSSVYWPAPWELPIDIGRSTYNVTKTAVLDPFGRFTSSDGFQFVSTDYRRKVYRRLKMDPDGNLRLYSFNEEHRMWEVTWQLIPQPCTVHGICGANSMCTYDPVVGRTCYCLKGFKVKDPNDWTQGCEPEFDPSYFSCNSGKSVDFLHLRTTELYGYDWNVTRVSSLKECQNICLQLCDKCRGVQFKFNDVATYNCYPKTMVFNGRDSPNFDGEMYLKLPKAILLSSSKPVKHSPMNCPVGLSQRLKRFYPTPRKNSTLSFLVWFACGIGAFELSTIFLVWFFLFRTSKQPDTVDQQRHLLSATGFQRFTYAELKSATKGFSKETGRGAGGVVYKGTLYDHRVAAVKRLSEANQGEAEFLAEISTIGMLNHMNLIDMWGYCVEGKHRLLVYEYMEHGSLADNLFSNALDWKKRFNVAVGTAKGLAYLHEECLEWILHCDVKPQNILLDSDFQPKVADFGLSKLLNRDERGNSNFSRIRGTRGYMAPEWVYNLRITSKVDVYSYGIVVLETVSGRSPMELIHGLENSRGIEQRRLVTWVTDKINHAATREFWIEEIIDPNLEGRYDAAQVEILVKVALQCVQDDMNERPSMSQVAEMLQSHENKTPP 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3749 863 Gene3D Transferase(Phosphotransferase) domain 1 651 862 - -
Ssu1g3749 863 ProSiteProfiles PAN/Apple domain profile. 395 477 IPR003609 -
Ssu1g3749 863 ProSiteProfiles Protein kinase domain profile. 576 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3749 863 Gene3D - 83 208 IPR036426 -
Ssu1g3749 863 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 85 860 - -
Ssu1g3749 863 ProSitePatterns Serine/Threonine protein kinases active-site signature. 692 704 IPR008271 GO:0004672|GO:0006468
Ssu1g3749 863 SMART serkin_6 576 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3749 863 Pfam S-locus glycoprotein domain 301 375 IPR000858 GO:0048544
Ssu1g3749 863 SMART blect_4 94 209 IPR001480 -
Ssu1g3749 863 Gene3D - 210 339 IPR036426 -
Ssu1g3749 863 Pfam D-mannose binding lectin 135 220 IPR001480 -
Ssu1g3749 863 CDD PAN_AP_plant 394 477 - -
Ssu1g3749 863 Gene3D Phosphorylase Kinase; domain 1 542 650 - -
Ssu1g3749 863 SUPERFAMILY alpha-D-mannose-specific plant lectins 123 265 IPR036426 -
Ssu1g3749 863 CDD B_lectin 102 209 IPR001480 -
Ssu1g3749 863 PIRSF SRK 73 863 IPR024171 GO:0004674
Ssu1g3749 863 ProSiteProfiles Bulb-type lectin domain profile. 79 207 IPR001480 -
Ssu1g3749 863 SUPERFAMILY Protein kinase-like (PK-like) 552 854 IPR011009 -
Ssu1g3749 863 Pfam Protein kinase domain 580 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3749 863 PANTHER OS07G0415500 PROTEIN 85 860 - -
Ssu1g3749 863 CDD STKc_IRAK 583 855 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3749 Ssu-Chr1 94021332 94027034 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3749 532 855 Receptor kinase-like Gene Family AT1G60800 39.583 7.24e-66 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu1g3749 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3749 - - gmx:100816469 1352.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3749 1 94021332 94027034 Ssu1g3749 1 94021332 94027034 ECH