Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3747 ATGTCGTTGATCCTCCTCTCTCTTGTTATGTCTCTACGACCTTCATCTTCAGCAGTGCACACCATGCATCAAGGTTCATCCCTCTCAGTGGAGTACCCAAAAGACGTCATGCTCTCACCAAACGGCATGTTCTCTGCTGGCTTCTATGCCGTTGGTGAAAATGCATATTCCTTAGCCGTTTGGTTCTCCGAACCCTACGGCCAAAACCGAAACTCAACCGTCGTATGGATGGCAAACCGTGACCAGCCAGTAAACGGCAAGGGCTCAAAGCTTTCACTACTCGACAACGGCAATCTCGCCTTAAACGACGCTGACGAGTCCCACGTGTGGTCCACAAACACTGTTTCATTGTCCTCCTCTGCTGCACCTATTTCTCGACAACACTGGCAACCTCGTTCTCCGCGAAACGGAGGAAGCGAGACTAACAAGTCCTCGGGTTTCTACTCCCTGTTCTTCGACAGTGATAACATTCTTCGCCTTCTTTATGATGGTCCTGAGGTTTCAGGCCTTTACTGGCCAGATCCATGGTTGGCCCCTTGGAGCGCTGGAAGGGAGAGTTACAACAACAGCAGAGTTGCGGTGATGGACACACTCGGCAATTTTAGTTCATCGGATGAGTTCACTTTTATGACATCTGATTACGGCACTGTGATCCAAAGAAGATTAATCCTTGATCATGATGGAAACATTCGTGTTTATAGTCGGAGACACGGAGGAGAGAAATGGTCTATTACATGGCAAGCCAAGGAAAAACCATGTAGCATTCATGGTATCTGTGGCCCCAATAGTTTGTGCTCTTATCATCAAAATTCTGGTGTGACATGCTCTTGCCTTCCCGGGTATAAGATGAAGAATGATGGCGATTGGTCTTATGGGTGTGAACCGAAATTCTACGCGTCTTGCAACAAAACCGAGTCTCGGTTTTTGTTCATAAGCAACGTGGAGTTATATGGCTATGACTATGGGTTCATGCCAAATTACACGCTCCATCAGTGCCAGGAGTTATGCCTTCAATTATGCGACTGTAAAGGCATCCAGTATACCTATATCTTTTCCGCTGGCACTTATAACTGTTACCCGAAGTTGCAATTGCGGAATGGGTGTCGTTCACCGGATTTTAATGCTGATCTGTACTTGAAACTCCCAGCAAACAGTTCATATTCTTATGAGGGGTCCACAGACGAGCACAGTCTTGATTGCTCTTCGAGTTCGAGAACGATACAGCTTGAGAGAGCATATGACATCGGTCACGGAAGCAGATATGTTAAGTTCTTGCTTTGGTTTGTAGGGGGGGTGGGAGGACTTGAAGTTTTGTGCATATTTGTGATTTGGTTTTTTCTGGTGAGAACAAGGGGGCAACAATATTCTGGTGTAGATGCACGAGTCTATAATCTGGCCATGACTGGTTTTAGGAAGTTCAGTTATTCTGAGCTGAAACAAGCCACGAAAGGTTTTAGTCAAGAGATAGGAAGGGGTGCAGGAGGGATTGTATACAAAGGTGTGTTGTTGGATCGACGAGTTGCTGCAGTGAAGAGAGTCAAGGATGCTAATCAAGGAGAAGAAGAGTTCCTCACAGAAGTAAGCAGCATCGGAAGGCTTAACCACATGAACTTGATTGAGATGTGGGGATACTGTGCTGAGGGAAAACACAGGCTACTGGTGTACGAGTACATGGAGCATGGGTCTCTAGCACAAAATATCGAGTCCAATGCATTGGACTGGACCAAAAGGTTTGACATATCCTTAGGTACTGCAAGAGGTCTAGCTTATATCCACGAAGAGTGTTTGGAGTGGATTCTGCACTGCGATGTAAAGCCCCAAAACATACTTCTAGATTCTAATTATCAACCAAAGGTAGCGGATTTTGGGCTGTCCAAGCTGCGAAACAGAAATGATACTAGTACATACTCTAGTTTCTCAAGGATACGTGGAACCAGAGGTTACATGGCTCCTGAGTGggtttttaatttaccaatcaCATCCAAAGTTGACGTCTATAGCTATGGAATTGTTGTTTTGGAAATGATCACTGGAAAGAGCGCAACAAAGGATGTTGATGCCACTGATAATGGAGTGGAGAAGCAGCATCTCAGCCTGGTCGCGTGGCTTAAAGAGAAACAGAAGAATGGATCTGGGTGGGTTAATGAAATCTTAGACCCCACGGTAGAAGGAGTTTATGACGAGGGTAAGATGGAAGCTTTGGTTAGAGTGGCTCTACAATGtttagaggaagagaaggacaAGAGGCCCACCATGAGCCAAGCAGTAGAGATTCTTCAGAAATCTAGCTGCGAAAATGATAACCAGTGA 2310 0.4506 MSLILLSLVMSLRPSSSAVHTMHQGSSLSVEYPKDVMLSPNGMFSAGFYAVGENAYSLAVWFSEPYGQNRNSTVVWMANRDQPVNGKGSKLSLLDNGNLALNDADESHVWSTNTVSLSSSAAPISRQHWQPRSPRNGGSETNKSSGFYSLFFDSDNILRLLYDGPEVSGLYWPDPWLAPWSAGRESYNNSRVAVMDTLGNFSSSDEFTFMTSDYGTVIQRRLILDHDGNIRVYSRRHGGEKWSITWQAKEKPCSIHGICGPNSLCSYHQNSGVTCSCLPGYKMKNDGDWSYGCEPKFYASCNKTESRFLFISNVELYGYDYGFMPNYTLHQCQELCLQLCDCKGIQYTYIFSAGTYNCYPKLQLRNGCRSPDFNADLYLKLPANSSYSYEGSTDEHSLDCSSSSRTIQLERAYDIGHGSRYVKFLLWFVGGVGGLEVLCIFVIWFFLVRTRGQQYSGVDARVYNLAMTGFRKFSYSELKQATKGFSQEIGRGAGGIVYKGVLLDRRVAAVKRVKDANQGEEEFLTEVSSIGRLNHMNLIEMWGYCAEGKHRLLVYEYMEHGSLAQNIESNALDWTKRFDISLGTARGLAYIHEECLEWILHCDVKPQNILLDSNYQPKVADFGLSKLRNRNDTSTYSSFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMITGKSATKDVDATDNGVEKQHLSLVAWLKEKQKNGSGWVNEILDPTVEGVYDEGKMEALVRVALQCLEEEKDKRPTMSQAVEILQKSSCENDNQ 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3747 769 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 118 - -
Ssu1g3747 769 CDD STKc_IRAK 489 761 - -
Ssu1g3747 769 Gene3D - 16 127 IPR036426 -
Ssu1g3747 769 MobiDBLite consensus disorder prediction 121 141 - -
Ssu1g3747 769 Pfam D-mannose binding lectin 73 121 IPR001480 -
Ssu1g3747 769 ProSiteProfiles Protein kinase domain profile. 483 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3747 769 CDD PAN_AP_plant 300 382 - -
Ssu1g3747 769 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 173 IPR036426 -
Ssu1g3747 769 Pfam S-locus glycoprotein domain 204 284 IPR000858 GO:0048544
Ssu1g3747 769 SMART serkin_6 483 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3747 769 ProSiteProfiles PAN/Apple domain profile. 301 382 IPR003609 -
Ssu1g3747 769 Gene3D Phosphorylase Kinase; domain 1 450 557 - -
Ssu1g3747 769 SMART ntp_6 303 381 IPR003609 -
Ssu1g3747 769 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 138 764 - -
Ssu1g3747 769 ProSiteProfiles Bulb-type lectin domain profile. 13 154 IPR001480 -
Ssu1g3747 769 ProSitePatterns Protein kinases ATP-binding region signature. 489 511 IPR017441 GO:0005524
Ssu1g3747 769 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 2 118 - -
Ssu1g3747 769 Gene3D Transferase(Phosphotransferase) domain 1 558 769 - -
Ssu1g3747 769 Pfam Protein kinase domain 486 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3747 769 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 138 764 - -
Ssu1g3747 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 599 611 IPR008271 GO:0004672|GO:0006468
Ssu1g3747 769 PIRSF SRK 1 128 IPR024171 GO:0004674
Ssu1g3747 769 PIRSF SRK 128 769 IPR024171 GO:0004674
Ssu1g3747 769 SUPERFAMILY Protein kinase-like (PK-like) 463 759 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3747 Ssu-Chr1 93950995 93953401 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3747 419 760 Receptor kinase-like Gene Family AT5G45780 35.613 1.23e-62 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu1g3747 Pkinase 6.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3747 - - gmx:100792388 1245.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3747 1 93950995 93953401 Ssu1g3747 1 93950995 93953401 ECH