Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3737 ATGGAGACTCGTGCCGCTGCCAAGAGAAAGACAAACGCTGCCACCATAGTCGTAGTCGAAAAACAGCACCCCAAAAGGCAGCGGGTTGTGTTGGGTGAACTTCCCAATTTACCAAACATTATTGTCCCCGAAACACTGAATCCCCGCAGAGAGAAACTGCAATGTCGGAATGCGAAGAAACCAACCCCCACAAACAACATCATTTCTTCCCCCCAGATTCACGAACCTTATGTTTCCGACATCCATGAGTATCTTCGTGCAATGGAGAAGCAGAGAAAGAGAAGACCAATGATTGACTACATGGAGAAAATTCAGAAAGAAGTTACGGCAACCATGAGAGGAATATTGGTGGATTGGTTAGTCGAAGTAGCTGAGGAGTACAGGCTTCTCTCTGATACCCTTCATCTCTGTATTTCATACATCGATAGATTTTTATCGGTCAATCCTATGAGTAAATCAAGACTTCAGTTGCTGGGTGTTTCGTCCATGCTCATTGCTTCCAAGTATGAGGAAATTGACCCACCCCGTGTTGATGCGTTCTGCAACATCACTGATGACACGTACCATAAGGCAGAGGTTGTAAAGATGGAAGCTGACATACTCAAGTCCCTAAATTTTGAAATGGGAAATCCCACTGTAAACACCTTTCTAAGGAGGTTTGCTGATGCTGCTTCTGAGAACCAAAAAacTCCAAATTTGCAGATTGAATTTTTGGGCAGCTATCTTGCTGAGCTAAGTTTGTTGGACTATGATTGTTTAAAATTCTTGCCTTCTATTGTGGCTGCATCGGTTATATTTCTTGCCAGATTTATTATCTGGCCTGAAGTGCATCCTtgggtaaatattttttACTTCTTCTTGTGCGAATGCTCGGGTTACAAACCAGTTGAGTTAAAAGAATGTGTCCTCATCTTGCATGACTTGTATTTGTCAAGAAAGGCAGTGTCCTTCCAAGCTGTTAGGGAGAAATACAAGCAGCACAAGTTCAAATACGTGGCAAACCTGCCTTCCCCTCCATATGTACCGAGTTGTTACTTTGAAGATCAGTGA 1050 0.4257 METRAAAKRKTNAATIVVVEKQHPKRQRVVLGELPNLPNIIVPETLNPRREKLQCRNAKKPTPTNNIISSPQIHEPYVSDIHEYLRAMEKQRKRRPMIDYMEKIQKEVTATMRGILVDWLVEVAEEYRLLSDTLHLCISYIDRFLSVNPMSKSRLQLLGVSSMLIASKYEEIDPPRVDAFCNITDDTYHKAEVVKMEADILKSLNFEMGNPTVNTFLRRFADAASENQKTPNLQIEFLGSYLAELSLLDYDCLKFLPSIVAASVIFLARFIIWPEVHPWVNIFYFFLCECSGYKPVELKECVLILHDLYLSRKAVSFQAVREKYKQHKFKYVANLPSPPYVPSCYFEDQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3737 349 Pfam Cyclin, N-terminal domain 80 208 IPR006671 -
Ssu1g3737 349 Gene3D - 80 334 - -
Ssu1g3737 349 SMART Cyclin_C_2 211 338 IPR004367 -
Ssu1g3737 349 CDD CYCLIN 112 201 IPR013763 -
Ssu1g3737 349 SUPERFAMILY Cyclin-like 211 340 IPR036915 -
Ssu1g3737 349 SMART cyclin_7 118 202 IPR013763 -
Ssu1g3737 349 SMART cyclin_7 215 307 IPR013763 -
Ssu1g3737 349 Gene3D - 94 209 - -
Ssu1g3737 349 SUPERFAMILY Cyclin-like 69 208 IPR036915 -
Ssu1g3737 349 ProSitePatterns Cyclins signature. 113 144 IPR006671 -
Ssu1g3737 349 CDD CYCLIN 211 306 IPR013763 -
Ssu1g3737 349 PANTHER CYCLIN-A3-1-RELATED 22 348 - -
Ssu1g3737 349 Pfam Cyclin, C-terminal domain 211 337 IPR004367 -
Ssu1g3737 349 PANTHER CYCLINS 22 348 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3737 Ssu-Chr1 93777780 93792143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3737 3 348 Core Cell Cycle Gene Families AT5G43080 57.880 9.38e-134 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3737 K06627 - gmx:100787417 562.762