Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3735 ATGGGGAGAGGGAAGCTTCAGATCAAAAAGATTGAGAACACAACAAATAGGCACGTCACTTTCTCAAAGAGGAGGATTGGGCTTCTCAAGAAAGCTTACGAACTTTCTGTTCTTTGTGATGTTGATGTGGCTCTCATCTTGTTTTCCCCATCTGGAAGAGCCAGTCTCTTCTCCGGCCAAAAAAGCATTGAAGAAATTCTAGAACGATATGTTAATCTTCCGGAGGATGAACACGGAAGGATGCATAATCAAGAGCACATTCAAAAGTTGCTTAGTAAGTTGAAAGATGAAGCTGATCAAATATGTCAAGCCCCTAGAAgtttcaaaaagaattttatttgcaAGTCTCAATTGGAAGAGAGGGAGAAGCGACTATGGATATTTGAAGGTGATCCTTCTGAGATCACAACGCTGAGCGAGGCTGAATATCGTGAATATGTCCTTCGGGAAACTCTAAAACAAGTGCAACTGCGAAAGtgtgttttggaggaagCGTACAATTCTCGTGCCTCTCATCCACAGgTACATGCTACAAAAACTGTAGATGTAAATGGATTTGCTAGCAGAAGCTCAGAGAAGGCGGTAGATTGGTTTCCACAGGGAGATCCCCATGCTCAGACTCTAAACTTTGGGAATGTTTATGACGCTGTTCCTCTCAGCCCATTGTTACCAACGCCGCCCTCCCTCTCCCCCCAAACCTCTCCCACAAAACCCCCACAACAAGATCTCCTTCATCGGCGCGACAACGTCGGAATGGCCATTGCCCAGACCATCGTCACACAGGACCTCACCAACGAGCTCGTCCTCGTTGACACCATCGCTGTCTCTGTCGACTCCCACTTCACAGCCGGCTCCGATCTCTGCATCATCACCGCACATCACTAA 885 0.4497 MGRGKLQIKKIENTTNRHVTFSKRRIGLLKKAYELSVLCDVDVALILFSPSGRASLFSGQKSIEEILERYVNLPEDEHGRMHNQEHIQKLLSKLKDEADQICQAPRSFKKNFICKSQLEEREKRLWIFEGDPSEITTLSEAEYREYVLRETLKQVQLRKCVLEEAYNSRASHPQVHATKTVDVNGFASRSSEKAVDWFPQGDPHAQTLNFGNVYDAVPLSPLLPTPPSLSPQTSPTKPPQQDLLHRRDNVGMAIAQTIVTQDLTNELVLVDTIAVSVDSHFTAGSDLCIITAHH 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3735 294 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Ssu1g3735 294 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 220 - -
Ssu1g3735 294 MobiDBLite consensus disorder prediction 221 243 - -
Ssu1g3735 294 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu1g3735 294 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu1g3735 294 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu1g3735 294 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Ssu1g3735 294 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu1g3735 294 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu1g3735 294 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Ssu1g3735 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 248 292 IPR036291 -
Ssu1g3735 294 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Ssu1g3735 294 PANTHER MADS BOX PROTEIN 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3735 Ssu-Chr1 93739090 93748198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3735 1 159 Type I MADS-box Gene Family AT1G22130 45.304 8.88e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ssu1g3735 SRF-TF 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3735 - - gmx:100776548 343.584