LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g3732	ATGAGTGCTCCGCCGCGAGAAGAAGAGGCGtcgaaggaggaggaggagagggaCGACGAGGAGGCGAACCGGCTTCTAGAAGAAGCGTCggaggaggaagagaaagaggaagaggtGGCATACGAAGCGGGGGAGAAGATCCTGGTGGCGGATTTCGAGTTCGACTCGGTGGTGGACGATTCGAGCGTTCCTCCTTTCTCGTGGAAGAAGCTGTGGCTCTTCACTGGGCCCGGGTTCTTGATGAGCATAGCGTTCTTGGATCCGGGGAATCTTGAGGGGGACCTCCAGGCTGGAGCCATCGCGGGTTACTCGCTCCTCTGGCTCCTCATGTGGGCCACCTTCATGGGTCTCCTGATCCAGCTTCTGTCCGCCAGGGTCGGCGTCGCCACGGGCCGCCACCTCGCCGAGCTTTGCAGGGACGAGTATCCCAATTGGGCCCGCCTCGTGCTTTGGTTCATGGCGGAGCTGGCCCTTATCGGTGCCGACATTCAAGAGGTTATTGGAAGTGCCATCGCCATCCAAATTCTTAGCCGAGGCTTCTTCCCTCTCTGGGCCGGAGTTCTTATTACTGCTTCCGATTGCTTTGTCTTTCTATTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGCTGCTTTTGCAGTGCTCATCGCTATTATGGCTCTTTCTTTTGCCTGGATGTTTGGTGATGCAAAACCCAATGGAAAAGAGCTTTTAATGGGTATTTTGGTTCCAAGACTAAGCTCAAAAACAATTCGTCAGGCTGTGGGCGTTGTGGGTTGTGTCATTATGCCTCACAATGTATTCCTGCATTCTGCTTTGGTGCAGTCAAGGAAGGTTGTTCCCCATAAGAAAGGTCGGGTACAGGAGGCTATCAACTACTACTCAATTGAGTCATCGGCTGCGCTTGTAGTCTCCTTCATGATCAATCTATTTGTCACAACAGTTTTTGCAAAGGGTTTTTATGGAACAAAGCAGGCAAATAGCATAGGATTGGTCAATGCAGGGCAGTATCTTGAAGAAAAGTATGGAGGAGGAGTCTTCCCTATTCTTTATATATGGGGAATTGGATTATTGGCAGCTGGGCAGAGTAGCACCATCACTGGCACATATGCTGGGCAATTTATAATGGGGGGTTTCCTGAACCTTCGTTTAAAGAAATGGTTGAGAGCATTAATCACGCGAAGTTTTGCAATTGTGCCAACTATAATTGTAGctattgtttttaatagatCAGAAGCCTCATTAGATGTTTTGAATGAATGGCTCAATGTGCTTCAGTCCATGCAAATTCCCTTTGCTCTGATTCCCCTCCTCACGTTGGTCTCCAAAGAGCAGATCATGGGGACCTTTAGGGTTGGGCCTGTTCTTGAGagAGCGGCATGGACTGTTGCTGGActgataatagtaattaatggGTATCTCTTGTTAGATTTCTTCCTTTCTGAGGTGAATGGCCTGCTGCTTGGTCTTTTAGCCTGCTCCTGCACAGCAGCCTATGTTGCATTCATTGtatatttggtttcacagaGCGGTGCTCTTCCTTCTGCTTGGGTTAGTCGTCTTCCCAAGGGATTTTCTCCTACTGGGAATTAA	1593	0.4652	MSAPPREEEASKEEEERDDEEANRLLEEASEEEEKEEEVAYEAGEKILVADFEFDSVVDDSSVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATFMGLLIQLLSARVGVATGRHLAELCRDEYPNWARLVLWFMAELALIGADIQEVIGSAIAIQILSRGFFPLWAGVLITASDCFVFLFLENYGVRKLEAAFAVLIAIMALSFAWMFGDAKPNGKELLMGILVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKVVPHKKGRVQEAINYYSIESSAALVVSFMINLFVTTVFAKGFYGTKQANSIGLVNAGQYLEEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSFAIVPTIIVAIVFNRSEASLDVLNEWLNVLQSMQIPFALIPLLTLVSKEQIMGTFRVGPVLERAAWTVAGLIIVINGYLLLDFFLSEVNGLLLGLLACSCTAAYVAFIVYLVSQSGALPSAWVSRLPKGFSPTGN	530

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g3732	530	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	69	447	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu1g3732	530	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	27	519	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu1g3732	530	Coils	Coil	12	39	-	-
	Ssu1g3732	530	MobiDBLite	consensus disorder prediction	1	37	-	-
	Ssu1g3732	530	PRINTS	Natural resistance-associated macrophage protein signature	361	380	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu1g3732	530	PRINTS	Natural resistance-associated macrophage protein signature	150	176	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu1g3732	530	PRINTS	Natural resistance-associated macrophage protein signature	205	226	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu1g3732	530	PRINTS	Natural resistance-associated macrophage protein signature	254	277	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu1g3732	530	PRINTS	Natural resistance-associated macrophage protein signature	389	406	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu1g3732	530	PRINTS	Natural resistance-associated macrophage protein signature	423	442	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu1g3732	530	PRINTS	Natural resistance-associated macrophage protein signature	180	199	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu1g3732	530	Hamap	Divalent metal cation transporter MntH [mntH].	58	479	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu1g3732	530	Pfam	Natural resistance-associated macrophage protein	92	453	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu1g3732	530	PANTHER	BNAC08G04640D PROTEIN	27	519	-	-
	Ssu1g3732	530	MobiDBLite	consensus disorder prediction	12	37	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g3732	Ssu-Chr1	93702646	93706821	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g3732	14	510	Inorganic Solute Cotransporters	AT1G47240	79.719	0.0	812

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g3732	K21398		-	gmx:100791117	902.894

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu1g3732	1	93702646	93706821	Ssu1g3732	1	93702646	93706821	ECH