Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3719 ATGAGCTGCAACGGTTGCCGAGTCCTCCGCAAAAGATGCAGCGAGAGGTGCGCCCTCAGGTCGTCCATCCAGTGGATCGATTCACCCCAAGCACAAGCACATGCAACTCTCTTTCTCGCTAAGTTCTTTGGCCGTAGCGACCTCATGTTTTTCATCTCCTCCGTCTCCCTTCACCACAGACCCGCCCTGTTTCAGTCTCTACTGTTTGAAGCGTGCGGGCGAACGATTAATCCCGTTAACGGTGCCGTCGGACTGCTGTGCAGTGGTAAGTGGCACGTGTGCCAGGCCGCCGTCAACACGGTGCTCGCCGGAGGCGTTCTCCGGCCGTTACCGGAGATTGTGGCGCCGACTTTGGATGAATTCTCAGACAGcatgttttctcattttcagGCACTAGCGTCGGATTCTTTGCTGATTCAAGATGCAACGGCACCGGATATGTCGTTGGTTTCCGGAGAATCGGAGATGGCAAACTATGATATTTACGGTGACGATGAGAAAAAGCTTTTGAATCTGTTTGTGTAG 525 0.52 MSCNGCRVLRKRCSERCALRSSIQWIDSPQAQAHATLFLAKFFGRSDLMFFISSVSLHHRPALFQSLLFEACGRTINPVNGAVGLLCSGKWHVCQAAVNTVLAGGVLRPLPEIVAPTLDEFSDSMFSHFQALASDSLLIQDATAPDMSLVSGESEMANYDIYGDDEKKLLNLFV 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3719 174 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Ssu1g3719 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 118 - -
Ssu1g3719 174 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Ssu1g3719 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3719 Ssu-Chr1 93513195 93513846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3719 1 123 AS2 family AT3G49940 65.909 1.77e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu1g3719 LOB 4.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3719 - - gmx:100800624 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3719 1 93513195 93513846 Ssu1g3719 1 93513195 93513846 ECH